y
Basic Information | |
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Species | Thellungiella halophila |
Cazyme ID | Thhalv10015735m |
Family | AA3 |
Protein Properties | Length: 322 Molecular Weight: 35332.8 Isoelectric Point: 9.2222 |
Chromosome | Chromosome/Scaffold: 2 Start: 12888541 End: 12889593 |
Description | Glucose-methanol-choline (GMC) oxidoreductase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA3 | 28 | 320 | 1.7e-39 |
MKLNEVILSAGAMGSPHLLMLSGVGPKAHLAAHGVKHMVLDHPMVGQGMGDNPMNLVFVPSPMPVEMSLVQVVGITKFDSYIEGGSNVSISYDLTRRFFD GVLDLFNETSRTTSRKILTQSIAKLLKSLDLGFKVAINANGMVQKVTGPASRGYMELQNTNPDDNPSVTFNYYQEPEDLNKCVEGLNTIIKVIDSKAFSK YKYPGVTGRELLNHMLTLPTNLRPRHVTSTFNLKQFCIDTVMTMYHYHGGCQVGRVVDKNYKVLGIDALRVIDGSTFLKSPGTNPQATVMMLG |
Full Sequence |
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Protein Sequence Length: 322 Download |
SQRPKANEVI FQDANGVFHK VELASHTMKL NEVILSAGAM GSPHLLMLSG VGPKAHLAAH 60 GVKHMVLDHP MVGQGMGDNP MNLVFVPSPM PVEMSLVQVV GITKFDSYIE GGSNVSISYD 120 LTRRFFDGVL DLFNETSRTT SRKILTQSIA KLLKSLDLGF KVAINANGMV QKVTGPASRG 180 YMELQNTNPD DNPSVTFNYY QEPEDLNKCV EGLNTIIKVI DSKAFSKYKY PGVTGRELLN 240 HMLTLPTNLR PRHVTSTFNL KQFCIDTVMT MYHYHGGCQV GRVVDKNYKV LGIDALRVID 300 GSTFLKSPGT NPQATVMMLG R* 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PRK02106 | PRK02106 | 6.0e-14 | 31 | 78 | 48 | + choline dehydrogenase; Validated | ||
TIGR01810 | betA | 6.0e-21 | 6 | 320 | 344 | + choline dehydrogenase. Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both gram-positive and gram-negative bacteria. As in Escherichia coli , Staphylococcus xylosus , and Sinorhizobium meliloti, this enzyme is found associated in a transciptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other gram-positive organisms have been shown to employ a different enzymatic system, utlizing a soluable choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified [Cellular processes, Adaptations to atypical conditions]. | ||
pfam05199 | GMC_oxred_C | 1.0e-24 | 176 | 320 | 150 | + GMC oxidoreductase. This domain found associated with pfam00732. | ||
COG2303 | BetA | 3.0e-27 | 26 | 321 | 312 | + Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | ||
PLN02785 | PLN02785 | 2.0e-103 | 3 | 321 | 321 | + Protein HOTHEAD |
Gene Ontology | |
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GO Term | Description |
GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAN60330.1 | 0 | 1 | 321 | 141 | 455 | unknown [Arabidopsis thaliana] |
DDBJ | BAB11041.1 | 0 | 2 | 321 | 269 | 586 | mandelonitrile lyase-like protein [Arabidopsis thaliana] |
EMBL | CAB87405.1 | 0 | 1 | 321 | 243 | 557 | ADHESION OF CALYX EDGES-like protein [Arabidopsis thaliana] |
RefSeq | NP_200006.1 | 0 | 5 | 321 | 268 | 582 | glucose-methanol-choline (GMC) oxidoreductase family protein [Arabidopsis thaliana] |
RefSeq | NP_567032.1 | 0 | 1 | 321 | 243 | 557 | glucose-methanol-choline (GMC) oxidoreductase family protein [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3gdp_B | 0 | 6 | 321 | 230 | 507 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3gdp_A | 0 | 6 | 321 | 230 | 507 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3gdn_B | 0 | 6 | 321 | 230 | 507 | A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde |
PDB | 3gdn_A | 0 | 6 | 321 | 230 | 507 | A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde |
PDB | 1ju2_B | 0 | 6 | 321 | 230 | 507 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EX035172 | 238 | 84 | 321 | 0 |
EX032497 | 227 | 95 | 321 | 0 |
CX666126 | 292 | 31 | 321 | 0 |
HO799688 | 286 | 37 | 321 | 0 |
EX529929 | 307 | 14 | 320 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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