y
Basic Information | |
---|---|
Species | Fragaria vesca |
Cazyme ID | mrna13343.1-v1.0-hybrid |
Family | AA3 |
Protein Properties | Length: 598 Molecular Weight: 66361.5 Isoelectric Point: 9.4638 |
Chromosome | Chromosome/Scaffold: 7 Start: 22078868 End: 22081501 |
Description | Glucose-methanol-choline (GMC) oxidoreductase family protein |
View CDS |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
AA3 | 44 | 566 | 0 |
LEIFYDYIIVGGGTAGCPLAATLSHGDAKVLVLERGGSPYTNPNITDIGNFASVLLDKSPTSPAQPFTSEDGVYNARARILGGGSAVNAGFYSRASTPYI KEAGWNQKWVEQAYEWVEQVVAFQPPMLEWETALRDGLLEVGVLPNNGYTFNHSYGTKVGGTIFDREGHRHTAADLLEYANPSSITVYLHAIVHKVLFRR IPGRARPQAYGVIYKDANGVRHQAYLNSDPKNEIILTAGAIGSPQLLMLSGIGPGYHLQKHGIQMVVDQPLVGQGMADNPMNVLLIPSPLPVEVSLVQVV GITRFDTFIEGASGLSLVYPLAQRLAKSFRLILNEGNYEPFKVVPEAKPIAVDTVNAVVNGTLRAGVILEKITGPLSRGHLELRNLDPDDTPFVTFNYFK EPEDLRRCIQGMRTIISVINSKAFSKFRYKKMPIEALIKLMLTLPINNRRRHANAMFSLEQFCIDTVMTIWHYHGGCQVGRVVDKEYRVLGVDSLRVVDG STFHQTPGTNPQATVMMLGRQVY |
Full Sequence |
---|
Protein Sequence Length: 598 Download |
MDFRWWRRSF SGALLSWMFF FLRISCLDKA PDFTFVHEAT SAPLEIFYDY IIVGGGTAGC 60 PLAATLSHGD AKVLVLERGG SPYTNPNITD IGNFASVLLD KSPTSPAQPF TSEDGVYNAR 120 ARILGGGSAV NAGFYSRAST PYIKEAGWNQ KWVEQAYEWV EQVVAFQPPM LEWETALRDG 180 LLEVGVLPNN GYTFNHSYGT KVGGTIFDRE GHRHTAADLL EYANPSSITV YLHAIVHKVL 240 FRRIPGRARP QAYGVIYKDA NGVRHQAYLN SDPKNEIILT AGAIGSPQLL MLSGIGPGYH 300 LQKHGIQMVV DQPLVGQGMA DNPMNVLLIP SPLPVEVSLV QVVGITRFDT FIEGASGLSL 360 VYPLAQRLAK SFRLILNEGN YEPFKVVPEA KPIAVDTVNA VVNGTLRAGV ILEKITGPLS 420 RGHLELRNLD PDDTPFVTFN YFKEPEDLRR CIQGMRTIIS VINSKAFSKF RYKKMPIEAL 480 IKLMLTLPIN NRRRHANAMF SLEQFCIDTV MTIWHYHGGC QVGRVVDKEY RVLGVDSLRV 540 VDGSTFHQTP GTNPQATVMM LGRQVYTKHV IMKLYLKQDM KTKKFTLGSG SSRMKKA* 600 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
TIGR01810 | betA | 1.0e-18 | 49 | 322 | 311 | + choline dehydrogenase. Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both gram-positive and gram-negative bacteria. As in Escherichia coli , Staphylococcus xylosus , and Sinorhizobium meliloti, this enzyme is found associated in a transciptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other gram-positive organisms have been shown to employ a different enzymatic system, utlizing a soluable choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified [Cellular processes, Adaptations to atypical conditions]. | ||
pfam05199 | GMC_oxred_C | 7.0e-26 | 418 | 562 | 153 | + GMC oxidoreductase. This domain found associated with pfam00732. | ||
TIGR03970 | Rv0697 | 7.0e-34 | 49 | 565 | 564 | + dehydrogenase, Rv0697 family. This model describes a set of dehydrogenases belonging to the glucose-methanol-choline oxidoreductase (GMC oxidoreductase) family. Members of the present family are restricted to Actinobacterial genome contexts containing also members of families TIGR03962 and TIGR03969 (the mycofactocin system), and are proposed to be uniform in function. | ||
COG2303 | BetA | 5.0e-48 | 48 | 566 | 569 | + Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | ||
PLN02785 | PLN02785 | 0 | 19 | 563 | 552 | + Protein HOTHEAD |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ju2_B | 0 | 33 | 581 | 12 | 523 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
PDB | 1ju2_A | 0 | 33 | 581 | 12 | 523 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
PDB | 3gdp_B | 0 | 33 | 568 | 12 | 512 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
PDB | 3gdp_A | 0 | 33 | 568 | 12 | 512 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
PDB | 3gdn_B | 0 | 33 | 568 | 12 | 512 | A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde |