y
Basic Information | |
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Species | Aquilegia coerulea |
Cazyme ID | Aquca_025_00060.1 |
Family | AA3 |
Protein Properties | Length: 598 Molecular Weight: 65615.4 Isoelectric Point: 7.9933 |
Chromosome | Chromosome/Scaffold: 25 Start: 287297 End: 289870 |
Description | Glucose-methanol-choline (GMC) oxidoreductase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA3 | 63 | 590 | 0 |
PEEEYDYIIVGGGTAGCPLAATLSENHKVLVLERGGHTLEYPNLWSQEGFLTTLTQINTYDSPAEPFTSEDGVANARGRVLGGSSAINAGFYSRADPDFF DQSGFTWNLDLVNRSYDWVENVVVFRPQLKNWQSSIRDGLLQANITPYNGYNLNHVIGTKIGGSTFDGLGRRHTSADLLNHARPSNVKVALHASVERILF KTDNTHTFSSSRGGGGSGRGGGGGGSGDGSSSKKPEAIGVVYRDRIGRHHHAMVRGKGEVIICAGAIGSPQLLLLSGIGPRAYLSSWGIPVIHHLPYVGQ YLYDNPRNGISIVPPLPLEHSLIQVVGITESGTYIEASSNIIPFTAPPRNIFLHNPGSSSLYLTVATIMEKISGPLSFGSLRLASTDVRVNPLVRFNYFS NTEDLARCVRGMRKIGEVLRTRSLEEFKFPEWFGGRDFRYVGPMLPFNQSDDGLMGEFCRRTVTTIWHYHGGCVVGKVVDGDHRVIGVDKLRIIDGSTLS LSPGTNPQATLMMLGRYMGRRMVEERRR |
Full Sequence |
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Protein Sequence Length: 598 Download |
MRIIKNLKPT FGLLFFSQNL LFLLLHLTFI FLLIDSIALA QAQQQPQGPS YLQFVFNATE 60 FSPEEEYDYI IVGGGTAGCP LAATLSENHK VLVLERGGHT LEYPNLWSQE GFLTTLTQIN 120 TYDSPAEPFT SEDGVANARG RVLGGSSAIN AGFYSRADPD FFDQSGFTWN LDLVNRSYDW 180 VENVVVFRPQ LKNWQSSIRD GLLQANITPY NGYNLNHVIG TKIGGSTFDG LGRRHTSADL 240 LNHARPSNVK VALHASVERI LFKTDNTHTF SSSRGGGGSG RGGGGGGSGD GSSSKKPEAI 300 GVVYRDRIGR HHHAMVRGKG EVIICAGAIG SPQLLLLSGI GPRAYLSSWG IPVIHHLPYV 360 GQYLYDNPRN GISIVPPLPL EHSLIQVVGI TESGTYIEAS SNIIPFTAPP RNIFLHNPGS 420 SSLYLTVATI MEKISGPLSF GSLRLASTDV RVNPLVRFNY FSNTEDLARC VRGMRKIGEV 480 LRTRSLEEFK FPEWFGGRDF RYVGPMLPFN QSDDGLMGEF CRRTVTTIWH YHGGCVVGKV 540 VDGDHRVIGV DKLRIIDGST LSLSPGTNPQ ATLMMLGRYM GRRMVEERRR GDSSEDD* 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PRK02106 | PRK02106 | 7.0e-24 | 232 | 572 | 389 | + choline dehydrogenase; Validated | ||
TIGR03970 | Rv0697 | 1.0e-29 | 68 | 572 | 548 | + dehydrogenase, Rv0697 family. This model describes a set of dehydrogenases belonging to the glucose-methanol-choline oxidoreductase (GMC oxidoreductase) family. Members of the present family are restricted to Actinobacterial genome contexts containing also members of families TIGR03962 and TIGR03969 (the mycofactocin system), and are proposed to be uniform in function. | ||
TIGR01810 | betA | 2.0e-32 | 68 | 561 | 573 | + choline dehydrogenase. Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both gram-positive and gram-negative bacteria. As in Escherichia coli , Staphylococcus xylosus , and Sinorhizobium meliloti, this enzyme is found associated in a transciptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other gram-positive organisms have been shown to employ a different enzymatic system, utlizing a soluable choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified [Cellular processes, Adaptations to atypical conditions]. | ||
COG2303 | BetA | 2.0e-44 | 63 | 572 | 576 | + Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | ||
PLN02785 | PLN02785 | 6.0e-166 | 50 | 572 | 563 | + Protein HOTHEAD |
Gene Ontology | |
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GO Term | Description |
GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABE65766.1 | 0 | 49 | 590 | 36 | 552 | mandelonitrile lyase [Arabidopsis thaliana] |
RefSeq | NP_177448.1 | 0 | 49 | 590 | 36 | 552 | (R)-mandelonitrile lyase, putative / (R)-oxynitrilase, putative [Arabidopsis thaliana] |
Swiss-Prot | P52707 | 0 | 21 | 596 | 9 | 550 | MDL3_PRUSE RecName: Full=(R)-mandelonitrile lyase 3; AltName: Full=Hydroxynitrile lyase 3; Short=(R)-oxynitrilase 3; Flags: Precursor |
RefSeq | XP_002277531.1 | 0 | 31 | 590 | 14 | 548 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002311915.1 | 0 | 49 | 588 | 2 | 517 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3red_L | 0 | 50 | 588 | 10 | 518 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
PDB | 3red_K | 0 | 50 | 588 | 10 | 518 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
PDB | 3red_J | 0 | 50 | 588 | 10 | 518 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
PDB | 3red_I | 0 | 50 | 588 | 10 | 518 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
PDB | 3red_H | 0 | 50 | 588 | 10 | 518 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |