y
Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000256300 |
Family | AA3 |
Protein Properties | Length: 530 Molecular Weight: 58443.6 Isoelectric Point: 7.5457 |
Chromosome | Chromosome/Scaffold: 002398468 Start: 1972 End: 8687 |
Description | Glucose-methanol-choline (GMC) oxidoreductase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA3 | 223 | 503 | 5.5e-30 |
NGKTPAQKFTSEEGVPNVRGWVLDGSSMINAGFYTTADKEFFMKSGIEWDMYSVYKAYRWVEETIVFPPTMDRWQSAVAKAFMEADVGPDNGLNLDHIKG TKIGGSTFDNNGKRHGAVELLNKGDLNKLRVAVQATVEKILFSSKASSSSAIGIMYSDSNGRSHCAYVRRKWEAVLSAGAIGSPQLLQLSGIGPESYLSS LKIPVVSPHPYIGQFMYDNPCNLINILPPIPLEPSPVKIGGSIVGKVVDSGLRVLGINALRVMDASTFNFPPGANPQDTLM |
Full Sequence |
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Protein Sequence Length: 530 Download |
MAAMYVNHNS DNSSSPQLPS ALPQQVWITN TRATNHMTTD LSNLSLVAPY PSHESIQTTN 60 GADGKFSKLP FLMPSSKSVK PFKIVHSDVW GLALCISVEG FKYYVTFITF SDADWVEDPN 120 DHRSTTGLVV FLGSNPISWS SKKQNIVSRS SIEGEYRALS SIAAEIDWIK QLLRFLQVSI 180 SGTPTLYCDN LFAIAFTYFR YMRFVYNAND AQLDASYDYI EDNGKTPAQK FTSEEGVPNV 240 RGWVLDGSSM INAGFYTTAD KEFFMKSGIE WDMYSVYKAY RWVEETIVFP PTMDRWQSAV 300 AKAFMEADVG PDNGLNLDHI KGTKIGGSTF DNNGKRHGAV ELLNKGDLNK LRVAVQATVE 360 KILFSSKASS SSAIGIMYSD SNGRSHCAYV RRKWEAVLSA GAIGSPQLLQ LSGIGPESYL 420 SSLKIPVVSP HPYIGQFMYD NPCNLINILP PIPLEPSPVK IGGSIVGKVV DSGLRVLGIN 480 ALRVMDASTF NFPPGANPQD TLMDPLLAGM LALRCCKKDQ PERKSYSKVK 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02785 | PLN02785 | 5.0e-5 | 475 | 503 | 29 | + Protein HOTHEAD | ||
COG2303 | BetA | 9.0e-11 | 241 | 436 | 224 | + Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | ||
PRK02106 | PRK02106 | 2.0e-14 | 351 | 436 | 86 | + choline dehydrogenase; Validated | ||
cd09272 | RNase_HI_RT_Ty1 | 3.0e-35 | 110 | 195 | 86 | + Ty1/Copia family of RNase HI in long-term repeat retroelements. Ribonuclease H (RNase H) enzymes are divided into two major families, Type 1 and Type 2, based on amino acid sequence similarities and biochemical properties. RNase H is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a sequence non-specific manner in the presence of divalent cations. RNase H is widely present in various organisms, including bacteria, archaea and eukaryotes. RNase HI has also been observed as adjunct domains to the reverse transcriptase gene in retroviruses, in long-term repeat (LTR)-bearing and non-LTR retrotransposons. RNase HI in LTR retrotransposons perform degradation of the original RNA template, generation of a polypurine tract (the primer for plus-strand DNA synthesis), and final removal of RNA primers from newly synthesized minus and plus strands. The catalytic residues for RNase H enzymatic activity, three aspartatic acids and one glutamatic acid residue (DEDD) are unvaried across all RNase H domains. Phylogenetic patterns of RNase HI of LTR retroelements is classified into five major families, Ty3/Gypsy, Ty1/Copia, Bel/Pao, DIRS1 and the vertebrate retroviruses. Ty1/Copia family is widely distributed among the genomes of plants, fungi and animals. RNase H inhibitors have been explored as an anti-HIV drug target because RNase H inactivation inhibits reverse transcription. | ||
PLN02785 | PLN02785 | 1.0e-63 | 226 | 440 | 217 | + Protein HOTHEAD |
Gene Ontology | |
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GO Term | Description |
GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAH23313.1 | 0 | 199 | 463 | 37 | 349 | (R)-hydroxynitrile lyase [Prunus mume] |
DDBJ | BAH23313.1 | 0.002 | 462 | 499 | 491 | 528 | (R)-hydroxynitrile lyase [Prunus mume] |
DDBJ | BAH23314.1 | 0 | 199 | 463 | 37 | 349 | (R)-hydroxynitrile lyase [Prunus mume] |
DDBJ | BAH23314.1 | 0.002 | 462 | 499 | 491 | 528 | (R)-hydroxynitrile lyase [Prunus mume] |
Swiss-Prot | P52707 | 0 | 199 | 463 | 36 | 348 | MDL3_PRUSE RecName: Full=(R)-mandelonitrile lyase 3; AltName: Full=Hydroxynitrile lyase 3; Short=(R)-oxynitrilase 3; Flags: Precursor |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3red_L | 0 | 199 | 463 | 9 | 321 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
PDB | 3red_L | 0.000006 | 462 | 499 | 463 | 500 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
PDB | 3red_K | 0 | 199 | 463 | 9 | 321 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
PDB | 3red_K | 0.000006 | 462 | 499 | 463 | 500 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
PDB | 3red_J | 0 | 199 | 463 | 9 | 321 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EL438881 | 216 | 226 | 440 | 0 |
BU574699 | 200 | 229 | 428 | 0 |
BU645516 | 178 | 263 | 440 | 0 |
CN916502 | 182 | 259 | 440 | 0 |
GO501762 | 186 | 220 | 405 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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