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Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 907040 |
Family | AA3 |
Protein Properties | Length: 578 Molecular Weight: 62932.9 Isoelectric Point: 6.7052 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA3 | 43 | 569 | 0 |
LSHFDYIIIGGGTAGCALAATLSQNATVLVLERGGSPYDNPTASDINNFANTLLNITPNSWSQLFISEDGVFNSRARVLGGGTVINAGFYSRAEEDFVAE AGLERDEVEAAYEWVEKKVVFEPPVKGWQSAFRDGLLEAGVSPYNGFTYEHIVGTKFGGTIFDPDGRRHTAANLLEYANPNTIVVYLHASVHKILFTITG NQRPKAYGVIFQDANGVSYKAELATQDSIMSEVILSAGAIASPKLLMLSGVGPAAHLAAYGVNPVIVDQPMVGQGMSDNPMNPVFIPSPEPVEVSLVQAV GITKFGSYIEGGSALSVSISLTRSFFDGVLKLLKKTKLPTQSISKFFKTLDLTLNVTTKAGVMIQKANGPLSRGHLELRNTNPDDNPSVTFNYYKDPEDL NKCVEGLSTIIKVIDSKGYSKYKYPAPSARGLLNLILALPTNLRPRHITSTFDLQQYCIDTVMTIYHYHGGCQVGKVVDNNYKVLGIDALRVIDGSTFLK SPGTNPQATIMMLGRYMGQKILRERIA |
Full Sequence |
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Protein Sequence Length: 578 Download |
MNFHIFRLFH IILLAVFIFH DSCYSDEAGN YGFMKDATSA PKLSHFDYII IGGGTAGCAL 60 AATLSQNATV LVLERGGSPY DNPTASDINN FANTLLNITP NSWSQLFISE DGVFNSRARV 120 LGGGTVINAG FYSRAEEDFV AEAGLERDEV EAAYEWVEKK VVFEPPVKGW QSAFRDGLLE 180 AGVSPYNGFT YEHIVGTKFG GTIFDPDGRR HTAANLLEYA NPNTIVVYLH ASVHKILFTI 240 TGNQRPKAYG VIFQDANGVS YKAELATQDS IMSEVILSAG AIASPKLLML SGVGPAAHLA 300 AYGVNPVIVD QPMVGQGMSD NPMNPVFIPS PEPVEVSLVQ AVGITKFGSY IEGGSALSVS 360 ISLTRSFFDG VLKLLKKTKL PTQSISKFFK TLDLTLNVTT KAGVMIQKAN GPLSRGHLEL 420 RNTNPDDNPS VTFNYYKDPE DLNKCVEGLS TIIKVIDSKG YSKYKYPAPS ARGLLNLILA 480 LPTNLRPRHI TSTFDLQQYC IDTVMTIYHY HGGCQVGKVV DNNYKVLGID ALRVIDGSTF 540 LKSPGTNPQA TIMMLGRYMG QKILRERIAF QGKEEET* 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PRK02106 | PRK02106 | 3.0e-22 | 45 | 320 | 331 | + choline dehydrogenase; Validated | ||
pfam05199 | GMC_oxred_C | 2.0e-26 | 412 | 556 | 150 | + GMC oxidoreductase. This domain found associated with pfam00732. | ||
TIGR01810 | betA | 2.0e-28 | 47 | 564 | 570 | + choline dehydrogenase. Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both gram-positive and gram-negative bacteria. As in Escherichia coli , Staphylococcus xylosus , and Sinorhizobium meliloti, this enzyme is found associated in a transciptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other gram-positive organisms have been shown to employ a different enzymatic system, utlizing a soluable choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified [Cellular processes, Adaptations to atypical conditions]. | ||
COG2303 | BetA | 5.0e-36 | 45 | 567 | 575 | + Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | ||
PLN02785 | PLN02785 | 0 | 30 | 568 | 559 | + Protein HOTHEAD |
Gene Ontology | |
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GO Term | Description |
GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAB11043.1 | 0 | 1 | 557 | 1 | 563 | mandelonitrile lyase-like protein [Arabidopsis thaliana] |
EMBL | CAB87405.1 | 0 | 1 | 557 | 1 | 557 | ADHESION OF CALYX EDGES-like protein [Arabidopsis thaliana] |
RefSeq | NP_001119417.1 | 0 | 34 | 576 | 1 | 552 | glucose-methanol-choline (GMC) oxidoreductase family protein [Arabidopsis thaliana] |
RefSeq | NP_200008.1 | 0 | 1 | 576 | 1 | 585 | glucose-methanol-choline (GMC) oxidoreductase family protein [Arabidopsis thaliana] |
RefSeq | NP_567032.1 | 0 | 1 | 577 | 1 | 577 | glucose-methanol-choline (GMC) oxidoreductase family protein [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3gdp_B | 0 | 33 | 569 | 14 | 519 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 3gdp_A | 0 | 33 | 569 | 14 | 519 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 3gdn_B | 0 | 33 | 569 | 14 | 519 | A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde |
PDB | 3gdn_A | 0 | 33 | 569 | 14 | 519 | A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde |
PDB | 1ju2_B | 0 | 33 | 569 | 14 | 519 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |