y
Basic Information | |
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Species | Brachypodium distachyon |
Cazyme ID | Bradi1g77300.1 |
Family | AA3 |
Protein Properties | Length: 622 Molecular Weight: 67032.3 Isoelectric Point: 10.4131 |
Chromosome | Chromosome/Scaffold: 1 Start: 73673583 End: 73675903 |
Description | Glucose-methanol-choline (GMC) oxidoreductase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA3 | 63 | 609 | 0 |
FGRFVRHARDAPPVSSHYSYIVVGGGTAGCPLAATLAESAGGGHVLLLERGGYPYGNRNVSSELHFADALADTSPSSPAQRFVSEDGVVNARARVLGGGS CLNAGFYTRASGEYVRSSGWDARLVNASYKWVERELVFRPDVPRWQCALREGLLQAGVTPDNGYTFDHVPGTKIGGTIFDRTGRRHTAADFLRGAHPRRL TVLLHATVSRILFKRRGAGKPVAYGVVFRDRAGVQHHAYLRSGGGGEVILAAGTLGSPQLLMLSGVGPRAHLEKHGIRPVVVDQPLVGQGVADNPMNSVF VPSPSPVALSLVQVVGVTRFGSFIEGVSGSQFGIPLHGASRRRTARSFGMFSPMTGQLGALRPSERTPEAMRRAADAMRRLDRRAFRGGFILEKILGPLS TGHVELRSTDPNANPAVTFNYFRDPKDVERCVRGIETIERVVHSRAFSRFTYANASAMEAAFDRAALAKFLNLMPRHPRDDRPLQQYCRDTVMTIWHYHG GCHVGDVVDQDYRVIGVQGLRVVDSSTFKYSPGTNPQATVMMLGRYM |
Full Sequence |
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Protein Sequence Length: 622 Download |
MATRAPAGLR GLSSSVRPLS VIVAALVISL CLCTPATSQQ EEEEASASAS ASASAGQRQR 60 YGFGRFVRHA RDAPPVSSHY SYIVVGGGTA GCPLAATLAE SAGGGHVLLL ERGGYPYGNR 120 NVSSELHFAD ALADTSPSSP AQRFVSEDGV VNARARVLGG GSCLNAGFYT RASGEYVRSS 180 GWDARLVNAS YKWVERELVF RPDVPRWQCA LREGLLQAGV TPDNGYTFDH VPGTKIGGTI 240 FDRTGRRHTA ADFLRGAHPR RLTVLLHATV SRILFKRRGA GKPVAYGVVF RDRAGVQHHA 300 YLRSGGGGEV ILAAGTLGSP QLLMLSGVGP RAHLEKHGIR PVVVDQPLVG QGVADNPMNS 360 VFVPSPSPVA LSLVQVVGVT RFGSFIEGVS GSQFGIPLHG ASRRRTARSF GMFSPMTGQL 420 GALRPSERTP EAMRRAADAM RRLDRRAFRG GFILEKILGP LSTGHVELRS TDPNANPAVT 480 FNYFRDPKDV ERCVRGIETI ERVVHSRAFS RFTYANASAM EAAFDRAALA KFLNLMPRHP 540 RDDRPLQQYC RDTVMTIWHY HGGCHVGDVV DQDYRVIGVQ GLRVVDSSTF KYSPGTNPQA 600 TVMMLGRYMG LKIQKEGLIG K* 660 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
TIGR03970 | Rv0697 | 1.0e-24 | 83 | 606 | 567 | + dehydrogenase, Rv0697 family. This model describes a set of dehydrogenases belonging to the glucose-methanol-choline oxidoreductase (GMC oxidoreductase) family. Members of the present family are restricted to Actinobacterial genome contexts containing also members of families TIGR03962 and TIGR03969 (the mycofactocin system), and are proposed to be uniform in function. | ||
pfam05199 | GMC_oxred_C | 2.0e-26 | 460 | 606 | 152 | + GMC oxidoreductase. This domain found associated with pfam00732. | ||
TIGR01810 | betA | 5.0e-35 | 82 | 606 | 572 | + choline dehydrogenase. Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both gram-positive and gram-negative bacteria. As in Escherichia coli , Staphylococcus xylosus , and Sinorhizobium meliloti, this enzyme is found associated in a transciptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other gram-positive organisms have been shown to employ a different enzymatic system, utlizing a soluable choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified [Cellular processes, Adaptations to atypical conditions]. | ||
COG2303 | BetA | 4.0e-43 | 76 | 607 | 584 | + Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | ||
PLN02785 | PLN02785 | 0 | 80 | 618 | 539 | + Protein HOTHEAD |
Gene Ontology | |
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GO Term | Description |
GO:0009055 | electron carrier activity |
GO:0016491 | oxidoreductase activity |
GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAO15286.1 | 0 | 46 | 616 | 25 | 581 | Putative mandelonitrile lyase [Oryza sativa Japonica Group] |
GenBank | EAY79265.1 | 0 | 65 | 616 | 42 | 584 | hypothetical protein OsI_34381 [Oryza sativa Indica Group] |
GenBank | EAY88296.1 | 0 | 46 | 616 | 25 | 581 | hypothetical protein OsI_09753 [Oryza sativa Indica Group] |
RefSeq | NP_001065107.1 | 0 | 65 | 616 | 40 | 582 | Os10g0524500 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002468629.1 | 0 | 54 | 621 | 28 | 596 | hypothetical protein SORBIDRAFT_01g049320 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3red_L | 0 | 59 | 616 | 7 | 517 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
PDB | 3red_K | 0 | 59 | 616 | 7 | 517 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
PDB | 3red_J | 0 | 59 | 616 | 7 | 517 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
PDB | 3red_I | 0 | 59 | 616 | 7 | 517 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
PDB | 3red_H | 0 | 59 | 616 | 7 | 517 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
cutin biosynthesis | RXN-2121 | EC-1.1.1 | 18-hydroxyoleate dehydrogenase |
cutin biosynthesis | RXN-9802 | EC-1.1.1 | 16-hydroxypalmitate dehydrogenase |
suberin biosynthesis | RXN-2121 | EC-1.1.1 | 18-hydroxyoleate dehydrogenase |