y
Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10016915m |
Family | AA3 |
Protein Properties | Length: 585 Molecular Weight: 63915.8 Isoelectric Point: 6.2695 |
Chromosome | Chromosome/Scaffold: 5 Start: 11028833 End: 11031643 |
Description | Glucose-methanol-choline (GMC) oxidoreductase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA3 | 43 | 570 | 0 |
KLSHFDYIIIGGGTAGCALAATLSRDATVLVLERGGSPYDNPAATDIGNFVNTLLDIIPPNSWSQLFVSEDGVYNARARVLGGGTVINAGFYSRGEEDFM AEAGWDRDEVEAAYEWVEKKMVFQPPAKGWQSAFRDGLLEAGVSPNNGFTFRHIIGTKFGGTIFDPDGHRHTAANLLEYANPDNIVVFLHASVHKILFTT KGNQRPRAFGVIFQDSNGVVHKSELATQDSTNEVILSAGAIGSPQLLMLSGVGPKAHLTAYGVNPVIVDHPMVGQGMADNPMNPVLIPSPEPVEVSLVQA VGITKSGSYIEGGSGLSLSLRLTGSFFDAVLKLVKMMKLPTHSISKFLDSLDLSLNVTTQAGVIIQKTNGPHSRGHLELRNTDPDDNPSVTFNYYQDPED LNKCVEGLSTIMKVIDSKGYSKYTYDGVSSRGLLDFILTIPTNLRQRHITSAFDLKQYCKDTVMTIYHYHGGCQVGKVVDEDYKVLGIDALRVIDGSTFL KSPGTNPQATIMMMGRYMGQKILRERTV |
Full Sequence |
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Protein Sequence Length: 585 Download |
MVIKIFPLFH LIIVTVFIFH DSSCYSDEAG NYRFMKDATS APKLSHFDYI IIGGGTAGCA 60 LAATLSRDAT VLVLERGGSP YDNPAATDIG NFVNTLLDII PPNSWSQLFV SEDGVYNARA 120 RVLGGGTVIN AGFYSRGEED FMAEAGWDRD EVEAAYEWVE KKMVFQPPAK GWQSAFRDGL 180 LEAGVSPNNG FTFRHIIGTK FGGTIFDPDG HRHTAANLLE YANPDNIVVF LHASVHKILF 240 TTKGNQRPRA FGVIFQDSNG VVHKSELATQ DSTNEVILSA GAIGSPQLLM LSGVGPKAHL 300 TAYGVNPVIV DHPMVGQGMA DNPMNPVLIP SPEPVEVSLV QAVGITKSGS YIEGGSGLSL 360 SLRLTGSFFD AVLKLVKMMK LPTHSISKFL DSLDLSLNVT TQAGVIIQKT NGPHSRGHLE 420 LRNTDPDDNP SVTFNYYQDP EDLNKCVEGL STIMKVIDSK GYSKYTYDGV SSRGLLDFIL 480 TIPTNLRQRH ITSAFDLKQY CKDTVMTIYH YHGGCQVGKV VDEDYKVLGI DALRVIDGST 540 FLKSPGTNPQ ATIMMMGRYM GQKILRERTV IREKQQEETV KTEL* 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PRK02106 | PRK02106 | 2.0e-19 | 209 | 321 | 117 | + choline dehydrogenase; Validated | ||
pfam05199 | GMC_oxred_C | 1.0e-25 | 413 | 557 | 150 | + GMC oxidoreductase. This domain found associated with pfam00732. | ||
TIGR03970 | Rv0697 | 1.0e-28 | 69 | 557 | 526 | + dehydrogenase, Rv0697 family. This model describes a set of dehydrogenases belonging to the glucose-methanol-choline oxidoreductase (GMC oxidoreductase) family. Members of the present family are restricted to Actinobacterial genome contexts containing also members of families TIGR03962 and TIGR03969 (the mycofactocin system), and are proposed to be uniform in function. | ||
COG2303 | BetA | 3.0e-40 | 46 | 568 | 569 | + Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | ||
PLN02785 | PLN02785 | 0 | 1 | 568 | 586 | + Protein HOTHEAD |
Gene Ontology | |
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GO Term | Description |
GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAB11043.1 | 0 | 1 | 558 | 1 | 563 | mandelonitrile lyase-like protein [Arabidopsis thaliana] |
EMBL | CAB87405.1 | 0 | 1 | 558 | 1 | 557 | ADHESION OF CALYX EDGES-like protein [Arabidopsis thaliana] |
RefSeq | NP_001119417.1 | 0 | 35 | 577 | 1 | 552 | glucose-methanol-choline (GMC) oxidoreductase family protein [Arabidopsis thaliana] |
RefSeq | NP_200008.1 | 0 | 1 | 577 | 1 | 585 | glucose-methanol-choline (GMC) oxidoreductase family protein [Arabidopsis thaliana] |
RefSeq | NP_567032.1 | 0 | 1 | 577 | 1 | 576 | glucose-methanol-choline (GMC) oxidoreductase family protein [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3red_L | 0 | 34 | 569 | 14 | 519 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
PDB | 3red_K | 0 | 34 | 569 | 14 | 519 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
PDB | 3red_J | 0 | 34 | 569 | 14 | 519 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
PDB | 3red_I | 0 | 34 | 569 | 14 | 519 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
PDB | 3red_H | 0 | 34 | 569 | 14 | 519 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |