y
Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00032583m |
Family | AA3 |
Protein Properties | Length: 600 Molecular Weight: 65381.9 Isoelectric Point: 11.2269 |
Chromosome | Chromosome/Scaffold: 012902 Start: 3578 End: 5908 |
Description | Glucose-methanol-choline (GMC) oxidoreductase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA3 | 20 | 589 | 0 |
TATASREAQRHNLRFVRHARDAPLVSYYNYIVVGGGTAGCPLAATLSEHARVLLLERGGLPYGNRNVSSEYHFADALADTSPLSPAQRFVSEDGVVNARA RVLGGGSCLNAGFYTRASSAYVRASGWDHRLVNASYRWVERALVFRPGVPRWQGALREGLLEAGITPDNGYTLEHVPGTKIGGTIFDRRGRRHTAADLLR RAHPRRLTVFLHATVSRILFRRAGAVPAAAQGAKQPVASGVVFTDPLGVQHHVYLRRGGSVILAAGTLGSPQLLMLSGIGPRLHLEKHGIRTVHDQPGVG QGVADNPMNSVFVPSPIPVALSLVQVVGVTRFGSFIEGVSGSQFGIPLHGRGHGRGAARNFGMFSPMTGQLGTVPPRERTPEAMRRAAEVMRRLDRRAFR GGFILEKILGPLSTGHIELRSTDPHANPAVTFNYFRDPRDVERCARGIEAMERVVRSRAFSRFTYANHTAMDAAFRRAAGTAYFPVNLLPRHPGDTRPLQ QYCRDTVMTIWHYHGGCHVGGVVDRDYRVMGVQGLRVIDSSTFKYSPGTNPQATVMMLGRYMGLKILRER |
Full Sequence |
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Protein Sequence Length: 600 Download |
MSAGHMLILA AIVLGSSCIT ATASREAQRH NLRFVRHARD APLVSYYNYI VVGGGTAGCP 60 LAATLSEHAR VLLLERGGLP YGNRNVSSEY HFADALADTS PLSPAQRFVS EDGVVNARAR 120 VLGGGSCLNA GFYTRASSAY VRASGWDHRL VNASYRWVER ALVFRPGVPR WQGALREGLL 180 EAGITPDNGY TLEHVPGTKI GGTIFDRRGR RHTAADLLRR AHPRRLTVFL HATVSRILFR 240 RAGAVPAAAQ GAKQPVASGV VFTDPLGVQH HVYLRRGGSV ILAAGTLGSP QLLMLSGIGP 300 RLHLEKHGIR TVHDQPGVGQ GVADNPMNSV FVPSPIPVAL SLVQVVGVTR FGSFIEGVSG 360 SQFGIPLHGR GHGRGAARNF GMFSPMTGQL GTVPPRERTP EAMRRAAEVM RRLDRRAFRG 420 GFILEKILGP LSTGHIELRS TDPHANPAVT FNYFRDPRDV ERCARGIEAM ERVVRSRAFS 480 RFTYANHTAM DAAFRRAAGT AYFPVNLLPR HPGDTRPLQQ YCRDTVMTIW HYHGGCHVGG 540 VVDRDYRVMG VQGLRVIDSS TFKYSPGTNP QATVMMLGRY MGLKILRERL IRKGAEDKH* 600 660 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PRK02106 | PRK02106 | 2.0e-11 | 430 | 578 | 158 | + choline dehydrogenase; Validated | ||
TIGR01810 | betA | 2.0e-20 | 48 | 325 | 318 | + choline dehydrogenase. Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both gram-positive and gram-negative bacteria. As in Escherichia coli , Staphylococcus xylosus , and Sinorhizobium meliloti, this enzyme is found associated in a transciptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other gram-positive organisms have been shown to employ a different enzymatic system, utlizing a soluable choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified [Cellular processes, Adaptations to atypical conditions]. | ||
PRK02106 | PRK02106 | 6.0e-30 | 47 | 324 | 325 | + choline dehydrogenase; Validated | ||
COG2303 | BetA | 5.0e-37 | 47 | 589 | 592 | + Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | ||
PLN02785 | PLN02785 | 0 | 2 | 593 | 604 | + Protein HOTHEAD |
Gene Ontology | |
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GO Term | Description |
GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAO15286.1 | 0 | 15 | 593 | 24 | 586 | Putative mandelonitrile lyase [Oryza sativa Japonica Group] |
GenBank | EAY88296.1 | 0 | 15 | 593 | 24 | 586 | hypothetical protein OsI_09753 [Oryza sativa Indica Group] |
RefSeq | NP_001065107.1 | 0 | 24 | 589 | 31 | 583 | Os10g0524500 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002467623.1 | 0 | 1 | 589 | 5 | 579 | hypothetical protein SORBIDRAFT_01g031110 [Sorghum bicolor] |
RefSeq | XP_002468629.1 | 0 | 1 | 599 | 1 | 602 | hypothetical protein SORBIDRAFT_01g049320 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ju2_B | 0 | 32 | 589 | 12 | 517 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
PDB | 1ju2_A | 0 | 32 | 589 | 12 | 517 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
PDB | 3gdp_B | 0 | 32 | 589 | 12 | 517 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
PDB | 3gdp_A | 0 | 32 | 589 | 12 | 517 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
PDB | 3gdn_B | 0 | 32 | 589 | 12 | 517 | A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
cutin biosynthesis | RXN-2121 | EC-1.1.1 | 18-hydroxyoleate dehydrogenase |
cutin biosynthesis | RXN-9802 | EC-1.1.1 | 16-hydroxypalmitate dehydrogenase |
suberin biosynthesis | RXN-2121 | EC-1.1.1 | 18-hydroxyoleate dehydrogenase |