y
Basic Information | |
---|---|
Species | Gossypium raimondii |
Cazyme ID | Gorai.005G141700.1 |
Family | AA3 |
Protein Properties | Length: 532 Molecular Weight: 58019.1 Isoelectric Point: 6.8998 |
Chromosome | Chromosome/Scaffold: 05 Start: 38507307 End: 38509614 |
Description | Glucose-methanol-choline (GMC) oxidoreductase family protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
AA3 | 50 | 527 | 0 |
GKSFDYIVVGGGTAGCPLAATLSEKFSVLLVERGGSPYGNPWVMEKRYYGFSLIQTDEFSSVAQDFKSADGVRNCRGRVLGGSSAINGGFYSRASEDFID KVGWDKELVKDAYTWVESKIVSIPELTPWQTVVEFGLLEAGILPYNGYSLEHIEGTKIGGSIFDVWGIRHTSADLLKAANPKNIVVALNATVKNIVFEGN GNASETTVKGIRFIKSDGTTDQTYEAYLNQPKNCTSNGDVILSAGALGSPQILLSSGIGHREHFKKFSIPHVVNLKGVGKKMKDNPSIAVLVDTNPQNRL PDPPQVSGIAKDLKFIIEGGIIPTGFNATRMPIAAKIAFPVSEGELKLSSTDPRQNPSVKFNYLADENDLDDCANMVHLLERVAKSESIAFYLGVKPQNN LMTSTDGQRKFCKANVRTYYHYHGGCTVGSVVDDDYKVYGVKGLRVVDGSTFLESPGTNPMATLLMLGRYQGVKILRE |
Full Sequence |
---|
Protein Sequence Length: 532 Download |
MEAIKFQNTV HHDRILIAFI FLFVDLSLCS PSQTQGELPY MTSDVKEVAG KSFDYIVVGG 60 GTAGCPLAAT LSEKFSVLLV ERGGSPYGNP WVMEKRYYGF SLIQTDEFSS VAQDFKSADG 120 VRNCRGRVLG GSSAINGGFY SRASEDFIDK VGWDKELVKD AYTWVESKIV SIPELTPWQT 180 VVEFGLLEAG ILPYNGYSLE HIEGTKIGGS IFDVWGIRHT SADLLKAANP KNIVVALNAT 240 VKNIVFEGNG NASETTVKGI RFIKSDGTTD QTYEAYLNQP KNCTSNGDVI LSAGALGSPQ 300 ILLSSGIGHR EHFKKFSIPH VVNLKGVGKK MKDNPSIAVL VDTNPQNRLP DPPQVSGIAK 360 DLKFIIEGGI IPTGFNATRM PIAAKIAFPV SEGELKLSST DPRQNPSVKF NYLADENDLD 420 DCANMVHLLE RVAKSESIAF YLGVKPQNNL MTSTDGQRKF CKANVRTYYH YHGGCTVGSV 480 VDDDYKVYGV KGLRVVDGST FLESPGTNPM ATLLMLGRYQ GVKILREREH V* 540 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PRK02106 | PRK02106 | 3.0e-6 | 389 | 517 | 134 | + choline dehydrogenase; Validated | ||
PRK02106 | PRK02106 | 3.0e-27 | 51 | 333 | 333 | + choline dehydrogenase; Validated | ||
TIGR01810 | betA | 5.0e-34 | 54 | 517 | 556 | + choline dehydrogenase. Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both gram-positive and gram-negative bacteria. As in Escherichia coli , Staphylococcus xylosus , and Sinorhizobium meliloti, this enzyme is found associated in a transciptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other gram-positive organisms have been shown to employ a different enzymatic system, utlizing a soluable choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified [Cellular processes, Adaptations to atypical conditions]. | ||
COG2303 | BetA | 5.0e-40 | 46 | 528 | 565 | + Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | ||
PLN02785 | PLN02785 | 4.0e-150 | 19 | 528 | 592 | + Protein HOTHEAD |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_172871.1 | 0 | 38 | 530 | 1 | 485 | glucose-methanol-choline (GMC) oxidoreductase family protein [Arabidopsis thaliana] |
RefSeq | XP_002312249.1 | 0 | 41 | 527 | 1 | 486 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002315047.1 | 0 | 38 | 527 | 4 | 489 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002315048.1 | 0 | 4 | 529 | 1 | 527 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002522448.1 | 0 | 10 | 530 | 7 | 527 | glucose-methanol-choline (gmc) oxidoreductase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3gdp_B | 0 | 52 | 528 | 26 | 517 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 3gdp_A | 0 | 52 | 528 | 26 | 517 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 3gdn_B | 0 | 52 | 528 | 26 | 517 | A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde |
PDB | 3gdn_A | 0 | 52 | 528 | 26 | 517 | A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde |
PDB | 1ju2_B | 0 | 52 | 528 | 26 | 517 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |