y
Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000184832 |
Family | AA3 |
Protein Properties | Length: 487 Molecular Weight: 53118.5 Isoelectric Point: 9.4 |
Chromosome | Chromosome/Scaffold: 009738160 Start: 2141 End: 4048 |
Description | Glucose-methanol-choline (GMC) oxidoreductase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA3 | 47 | 482 | 0 |
NQVSGKSFDYIIVGGGTAGCPLAATLSEKFSVLLVERGGSPYENPLIMENKNFGLSLVQTDEYTSVAQSFVSKDGVSNLRGRVLGGGSAINGGFFSRASE DYVKRVGWNKQIVSDAYKWVESRNAFKPKLTPWPYVAELSLLEAGIFPYNGNRNVTVVRGIRFIKSDGSSSQTHEAYLNTQNNSRSSTGDVILAAGALGS PQILLLSGIGPXKHLNKFDIPVAVNLKSVGKGMQDNPSIALVPXVADAKPKNFPPDSPKVIAIADDFKLIVGSMILPISFNATIMLISGKLAFPESEGQL ELNSTDPRKNPSVTFNYLATEKDMAECVKLGRLLEQIVRSKSIAYFLGVEGKRRNESMSTDDELRKLCKNNVRTFYHYHGGCTMGSVVDKNYRVFGIDGL RVIDGSTFLESPGTNPMATLLMLGRYQGIKILQERE |
Full Sequence |
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Protein Sequence Length: 487 Download |
MAMGFFIVSV PPVCSSGPVL FMDSRIYSDF FLMAGQTLPR KTTSDVNQVS GKSFDYIIVG 60 GGTAGCPLAA TLSEKFSVLL VERGGSPYEN PLIMENKNFG LSLVQTDEYT SVAQSFVSKD 120 GVSNLRGRVL GGGSAINGGF FSRASEDYVK RVGWNKQIVS DAYKWVESRN AFKPKLTPWP 180 YVAELSLLEA GIFPYNGNRN VTVVRGIRFI KSDGSSSQTH EAYLNTQNNS RSSTGDVILA 240 AGALGSPQIL LLSGIGPXKH LNKFDIPVAV NLKSVGKGMQ DNPSIALVPX VADAKPKNFP 300 PDSPKVIAIA DDFKLIVGSM ILPISFNATI MLISGKLAFP ESEGQLELNS TDPRKNPSVT 360 FNYLATEKDM AECVKLGRLL EQIVRSKSIA YFLGVEGKRR NESMSTDDEL RKLCKNNVRT 420 FYHYHGGCTM GSVVDKNYRV FGIDGLRVID GSTFLESPGT NPMATLLMLG RYQGIKILQE 480 REKMLKP 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG2303 | BetA | 5.0e-32 | 237 | 471 | 271 | + Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | ||
pfam05199 | GMC_oxred_C | 6.0e-35 | 340 | 470 | 136 | + GMC oxidoreductase. This domain found associated with pfam00732. | ||
TIGR03970 | Rv0697 | 2.0e-35 | 55 | 470 | 503 | + dehydrogenase, Rv0697 family. This model describes a set of dehydrogenases belonging to the glucose-methanol-choline oxidoreductase (GMC oxidoreductase) family. Members of the present family are restricted to Actinobacterial genome contexts containing also members of families TIGR03962 and TIGR03969 (the mycofactocin system), and are proposed to be uniform in function. | ||
TIGR01810 | betA | 4.0e-40 | 55 | 470 | 535 | + choline dehydrogenase. Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both gram-positive and gram-negative bacteria. As in Escherichia coli , Staphylococcus xylosus , and Sinorhizobium meliloti, this enzyme is found associated in a transciptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other gram-positive organisms have been shown to employ a different enzymatic system, utlizing a soluable choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified [Cellular processes, Adaptations to atypical conditions]. | ||
PLN02785 | PLN02785 | 1.0e-125 | 31 | 481 | 555 | + Protein HOTHEAD |
Gene Ontology | |
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GO Term | Description |
GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_563939.1 | 0 | 32 | 481 | 16 | 503 | glucose-methanol-choline (GMC) oxidoreductase family protein [Arabidopsis thaliana] |
RefSeq | XP_002312249.1 | 0 | 43 | 483 | 2 | 489 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002315047.1 | 0 | 35 | 480 | 1 | 489 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002315048.1 | 0 | 32 | 482 | 29 | 527 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002522448.1 | 0 | 32 | 482 | 29 | 526 | glucose-methanol-choline (gmc) oxidoreductase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3gdp_B | 0 | 53 | 481 | 26 | 517 | A Chain A, Arabidopsis Thaliana Peroxidase A2 |
PDB | 3gdp_A | 0 | 53 | 481 | 26 | 517 | A Chain A, Arabidopsis Thaliana Peroxidase A2 |
PDB | 3gdn_B | 0 | 53 | 481 | 26 | 517 | A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde |
PDB | 3gdn_A | 0 | 53 | 481 | 26 | 517 | A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde |
PDB | 1ju2_B | 0 | 53 | 481 | 26 | 517 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO808060 | 252 | 232 | 481 | 0 |
HO796743 | 537 | 55 | 485 | 0 |
JZ191231 | 272 | 45 | 261 | 0 |
FF535424 | 220 | 217 | 436 | 0 |
CT981001 | 214 | 268 | 481 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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