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Basic Information | |
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Species | Brassica rapa |
Cazyme ID | Bra016766 |
Family | AA3 |
Protein Properties | Length: 571 Molecular Weight: 61756 Isoelectric Point: 8.1227 |
Chromosome | Chromosome/Scaffold: 08 Start: 19872550 End: 19874883 |
Description | Glucose-methanol-choline (GMC) oxidoreductase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA3 | 42 | 565 | 0 |
TTSYYDYIIIGGGTAGCPLAATLSQNSSVLLLERGGAPYNNPNITRLSAFGAALSDLSEASPSQRFISEDGVINARARVLGGGSALNAGFYTRAGTKYVR NMGWDGGLANESYSWVEAKVAFQPPMGRWQTAVRDGLLEVGIVPNNGFTYDHINGTKFGGTIFDHNGDRHTAADLLEYADPNGITVLLHATVHRILFRTR GTTKPIANGVVYRDRTGQAHRAYLKEGSSNEIIVSAGTLGSPQLLMLSGVGPSAQLQAQNITVVMDQPHVGQGMYDNPMNAVFIPSPVPVEVSLIEVVGI TGEGTYVEAAGGENFGGGGSSGSGSSARDYYAMFSPKATLLESNSMKLSSAQPFQGGFILEKVMGPLSTGHLELRTRNPNDNPVVTFNYFQHPDDLKRCV RGIQTIERVVQSKAFARFKYADMPFEYLLNLTASTPVNLRPPRSGPGASLPPSAEEFCQHTVTTIWHYHGGCVVGRVVDGDYKVIGIDRLRVIDMSTVGY CPGTNPQATVMMLGRYMGVKIMRE |
Full Sequence |
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Protein Sequence Length: 571 Download |
MMDRVWLWRF FAALSLFLHS PICYSDKAPN YSFMRDATGS PTTSYYDYII IGGGTAGCPL 60 AATLSQNSSV LLLERGGAPY NNPNITRLSA FGAALSDLSE ASPSQRFISE DGVINARARV 120 LGGGSALNAG FYTRAGTKYV RNMGWDGGLA NESYSWVEAK VAFQPPMGRW QTAVRDGLLE 180 VGIVPNNGFT YDHINGTKFG GTIFDHNGDR HTAADLLEYA DPNGITVLLH ATVHRILFRT 240 RGTTKPIANG VVYRDRTGQA HRAYLKEGSS NEIIVSAGTL GSPQLLMLSG VGPSAQLQAQ 300 NITVVMDQPH VGQGMYDNPM NAVFIPSPVP VEVSLIEVVG ITGEGTYVEA AGGENFGGGG 360 SSGSGSSARD YYAMFSPKAT LLESNSMKLS SAQPFQGGFI LEKVMGPLST GHLELRTRNP 420 NDNPVVTFNY FQHPDDLKRC VRGIQTIERV VQSKAFARFK YADMPFEYLL NLTASTPVNL 480 RPPRSGPGAS LPPSAEEFCQ HTVTTIWHYH GGCVVGRVVD GDYKVIGIDR LRVIDMSTVG 540 YCPGTNPQAT VMMLGRYMGV KIMRERLTNK * 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PRK02106 | PRK02106 | 9.0e-9 | 405 | 555 | 159 | + choline dehydrogenase; Validated | ||
TIGR01810 | betA | 8.0e-28 | 47 | 555 | 569 | + choline dehydrogenase. Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both gram-positive and gram-negative bacteria. As in Escherichia coli , Staphylococcus xylosus , and Sinorhizobium meliloti, this enzyme is found associated in a transciptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other gram-positive organisms have been shown to employ a different enzymatic system, utlizing a soluable choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified [Cellular processes, Adaptations to atypical conditions]. | ||
PRK02106 | PRK02106 | 1.0e-28 | 42 | 317 | 335 | + choline dehydrogenase; Validated | ||
COG2303 | BetA | 3.0e-34 | 46 | 556 | 555 | + Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | ||
PLN02785 | PLN02785 | 0 | 30 | 570 | 567 | + Protein HOTHEAD |
Gene Ontology | |
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GO Term | Description |
GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF79648.1 | 0 | 34 | 570 | 1 | 539 | AC025416_22 F5O11.31 [Arabidopsis thaliana] |
GenBank | AAF88098.1 | 0 | 28 | 570 | 5 | 549 | AC025417_26 T12C24.11 [Arabidopsis thaliana] |
GenBank | AAL47442.1 | 0 | 1 | 570 | 1 | 572 | At1g12570/T12C24_9 [Arabidopsis thaliana] |
RefSeq | NP_172718.2 | 0 | 1 | 570 | 1 | 572 | glucose-methanol-choline (GMC) oxidoreductase family protein [Arabidopsis thaliana] |
RefSeq | XP_002298074.1 | 0 | 9 | 570 | 7 | 573 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3gdp_B | 0 | 32 | 566 | 13 | 517 | A Chain A, Crystal Structure Of Human Class I Alpha-1,2-Mannosidase In Complex With Thio-Disaccharide Substrate Analogue |
PDB | 3gdp_A | 0 | 32 | 566 | 13 | 517 | A Chain A, Crystal Structure Of Human Class I Alpha-1,2-Mannosidase In Complex With Thio-Disaccharide Substrate Analogue |
PDB | 3gdn_B | 0 | 32 | 566 | 13 | 517 | A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde |
PDB | 3gdn_A | 0 | 32 | 566 | 13 | 517 | A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde |
PDB | 1ju2_B | 0 | 32 | 566 | 13 | 517 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
cutin biosynthesis | RXN-2121 | EC-1.1.1 | 18-hydroxyoleate dehydrogenase |
cutin biosynthesis | RXN-9802 | EC-1.1.1 | 16-hydroxypalmitate dehydrogenase |
suberin biosynthesis | RXN-2121 | EC-1.1.1 | 18-hydroxyoleate dehydrogenase |