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Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.003G039000.2 |
Family | AA3 |
Protein Properties | Length: 555 Molecular Weight: 60787.8 Isoelectric Point: 9.925 |
Chromosome | Chromosome/Scaffold: 03 Start: 5178423 End: 5182362 |
Description | Glucose-methanol-choline (GMC) oxidoreductase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA3 | 10 | 539 | 0 |
AQNNDHTYDYIVVGGGTAGCPLAATLSQKFNVLLLERGGMPFGNANISLLQNFHITLTDTSSTSASQYFISTDGVLNSRARVLGGGTCINAGFYTRASTR FINKVGWDLKLVNKSYSWVEKQIVHRPKVAPWQVVVRDSLLDLGVAPFNGFTYDHIYGTKFGGTIFDRFGRRHTAAELLASADPHKLTVLVHATVQKVLF DTSGKRPKAAGVLFRDENGNQHQAFLSNSLSEVILSCGAIGTPQMLLLSGVGPKAELKEMKISVVLNNKFVGQGMADNPLNSVFVPSKKPVKQSLIQTVG ITKMGVYIEASSGFGQSKDSIQCHHGIVSAEIGQLSTIPPKQRTPEAIQAYIRRKKDIPHEAFRGGFILEKISNPISTGKLKLINTNVEDNPSVTFNYFK HPHDLQRCVDGIRMATKMVQSEHFTNFTQCDKQTTDKILNMSVSANVNLIPKHTNDTKSLEQFCKDTVLSIWHYHGGCHVGKVVDREHKVLAVHRLRIVD GSVFDESPGTNPQATILMMGRYMGLKILRD |
Full Sequence |
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Protein Sequence Length: 555 Download |
MIFIFVSKHA QNNDHTYDYI VVGGGTAGCP LAATLSQKFN VLLLERGGMP FGNANISLLQ 60 NFHITLTDTS STSASQYFIS TDGVLNSRAR VLGGGTCINA GFYTRASTRF INKVGWDLKL 120 VNKSYSWVEK QIVHRPKVAP WQVVVRDSLL DLGVAPFNGF TYDHIYGTKF GGTIFDRFGR 180 RHTAAELLAS ADPHKLTVLV HATVQKVLFD TSGKRPKAAG VLFRDENGNQ HQAFLSNSLS 240 EVILSCGAIG TPQMLLLSGV GPKAELKEMK ISVVLNNKFV GQGMADNPLN SVFVPSKKPV 300 KQSLIQTVGI TKMGVYIEAS SGFGQSKDSI QCHHGIVSAE IGQLSTIPPK QRTPEAIQAY 360 IRRKKDIPHE AFRGGFILEK ISNPISTGKL KLINTNVEDN PSVTFNYFKH PHDLQRCVDG 420 IRMATKMVQS EHFTNFTQCD KQTTDKILNM SVSANVNLIP KHTNDTKSLE QFCKDTVLSI 480 WHYHGGCHVG KVVDREHKVL AVHRLRIVDG SVFDESPGTN PQATILMMGR YMGLKILRDR 540 LGKAAGLGAD QPGA* 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam05199 | GMC_oxred_C | 2.0e-22 | 384 | 529 | 151 | + GMC oxidoreductase. This domain found associated with pfam00732. | ||
TIGR03970 | Rv0697 | 7.0e-23 | 18 | 529 | 564 | + dehydrogenase, Rv0697 family. This model describes a set of dehydrogenases belonging to the glucose-methanol-choline oxidoreductase (GMC oxidoreductase) family. Members of the present family are restricted to Actinobacterial genome contexts containing also members of families TIGR03962 and TIGR03969 (the mycofactocin system), and are proposed to be uniform in function. | ||
TIGR01810 | betA | 2.0e-29 | 18 | 529 | 556 | + choline dehydrogenase. Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both gram-positive and gram-negative bacteria. As in Escherichia coli , Staphylococcus xylosus , and Sinorhizobium meliloti, this enzyme is found associated in a transciptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other gram-positive organisms have been shown to employ a different enzymatic system, utlizing a soluable choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified [Cellular processes, Adaptations to atypical conditions]. | ||
COG2303 | BetA | 1.0e-43 | 16 | 540 | 574 | + Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | ||
PLN02785 | PLN02785 | 0 | 7 | 547 | 542 | + Protein HOTHEAD |
Gene Ontology | |
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GO Term | Description |
GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI35951.1 | 0 | 15 | 547 | 60 | 593 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002275841.1 | 0 | 15 | 547 | 51 | 584 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002327436.1 | 0 | 1 | 554 | 1 | 554 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002329018.1 | 0 | 14 | 547 | 57 | 591 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527404.1 | 0 | 14 | 546 | 63 | 596 | glucose-methanol-choline (gmc) oxidoreductase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3red_L | 0 | 16 | 540 | 26 | 518 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
PDB | 3red_K | 0 | 16 | 540 | 26 | 518 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
PDB | 3red_J | 0 | 16 | 540 | 26 | 518 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
PDB | 3red_I | 0 | 16 | 540 | 26 | 518 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
PDB | 3red_H | 0 | 16 | 540 | 26 | 518 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
cutin biosynthesis | RXN-2121 | EC-1.1.1 | 18-hydroxyoleate dehydrogenase |
cutin biosynthesis | RXN-9802 | EC-1.1.1 | 16-hydroxypalmitate dehydrogenase |
suberin biosynthesis | RXN-2121 | EC-1.1.1 | 18-hydroxyoleate dehydrogenase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO796743 | 531 | 18 | 547 | 0 |
DV465590 | 282 | 207 | 488 | 0 |
ES808127 | 408 | 113 | 517 | 0 |
HO852522 | 376 | 169 | 543 | 0 |
CK271873 | 320 | 12 | 330 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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