y
Basic Information | |
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Species | Setaria italica |
Cazyme ID | Si026007m |
Family | GH3 |
Protein Properties | Length: 776 Molecular Weight: 82542.4 Isoelectric Point: 6.665 |
Chromosome | Chromosome/Scaffold: 8 Start: 14609743 End: 14614774 |
Description | Glycosyl hydrolase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH3 | 76 | 329 | 0 |
AGVPRLGVPAYKYWSEGLHGLAFWGHGLHFDGAVRGVTSFPQVLLTAASFDEGLWFRIGQAIGREARALYNLGQAEGLTIWSPNVNIFRDPRWGRGQETP GEDPATASKYAVAFVRGIQGSSPAGAGSSPLQASACCKHATAYDLEDWNGVQRYNFDARVTAQDLADTFNPPFRSCVVDGKASCVMCAYTGVNGVPACAS SDLLTKTFRGEWGLDGYVSSDCDAVAIMRDAQRYAPTPEDTVAVALKAGLDLNC |
Full Sequence |
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Protein Sequence Length: 776 Download |
MGAFFFRNAG AAMLPLLLAV LLSAAAADPG FSCGPSSPTR SLPFCDRSLP AAQRAADLVS 60 RLTVAEKVAQ MGDEAAGVPR LGVPAYKYWS EGLHGLAFWG HGLHFDGAVR GVTSFPQVLL 120 TAASFDEGLW FRIGQAIGRE ARALYNLGQA EGLTIWSPNV NIFRDPRWGR GQETPGEDPA 180 TASKYAVAFV RGIQGSSPAG AGSSPLQASA CCKHATAYDL EDWNGVQRYN FDARVTAQDL 240 ADTFNPPFRS CVVDGKASCV MCAYTGVNGV PACASSDLLT KTFRGEWGLD GYVSSDCDAV 300 AIMRDAQRYA PTPEDTVAVA LKAGLDLNCG TYTQEHGMSA IRQGKMSEKD VDKALTNLFA 360 VRMRLGHFDG DPRGSAPYGG LGAADVCTAE HKSLALEAAQ DGIVLLKNDA GILPLDRSAV 420 GSAAVIGHNA NNALVLSGNY FGPACETTTP LQGLQSYIKN VRFLAGCNSA ACGVAATGQA 480 AALATSSEYV FLFMGLSQDQ EKEGLDRTSL LLPGKQQGLI TAVAAASKRP VILVLLTGGP 540 VDITFAQSNP KIGAILWAGY PGQAGGLAIA RVLFGDHNPS GRLPVTWYPE EFTKIPMTDM 600 RMRANPATGY PGRSYRFYNG KTIYKFGYGL SYSKFSRRLV TGGKNPAPDT SLLAGLPSTS 660 VDTTSYYHID DIGADGCEQL KFPAEVEVEN HGPMDGKHSV LMFLRWPNAT DGRPSSQLIG 720 FQSQHLKAGE KASVRFDVSP CEHFGRARED GKMVIDRGSH FLMVGKDEWE ISFDA* 780 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG1472 | BglX | 1.0e-47 | 66 | 432 | 373 | + Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] | ||
pfam01915 | Glyco_hydro_3_C | 3.0e-54 | 403 | 633 | 237 | + Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933. | ||
pfam00933 | Glyco_hydro_3 | 6.0e-57 | 75 | 361 | 291 | + Glycosyl hydrolase family 3 N terminal domain. | ||
PRK15098 | PRK15098 | 1.0e-66 | 43 | 740 | 787 | + beta-D-glucoside glucohydrolase; Provisional | ||
PLN03080 | PLN03080 | 0 | 29 | 775 | 764 | + Probable beta-xylosidase; Provisional |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAX92971.1 | 0 | 28 | 775 | 24 | 771 | beta-D-xylosidase [Oryza sativa Japonica Group] |
GenBank | EAY80660.1 | 0 | 28 | 775 | 24 | 771 | hypothetical protein OsI_35838 [Oryza sativa Indica Group] |
RefSeq | NP_001067726.1 | 0 | 29 | 775 | 35 | 782 | Os11g0297800 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002489304.1 | 0 | 13 | 775 | 1 | 750 | hypothetical protein SORBIDRAFT_0010s007570 [Sorghum bicolor] |
RefSeq | XP_002489310.1 | 0 | 26 | 775 | 23 | 772 | hypothetical protein SORBIDRAFT_0010s010920 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3u48_B | 0 | 113 | 765 | 91 | 722 | A Chain A, Chitinase B From Serratia Marcescens Wildtype In Complex With Catalytic Intermediate |
PDB | 3u48_A | 0 | 113 | 765 | 91 | 722 | A Chain A, Chitinase B From Serratia Marcescens Wildtype In Complex With Catalytic Intermediate |
PDB | 3u4a_B | 0 | 113 | 765 | 91 | 722 | A Chain A, Chitinase B From Serratia Marcescens Wildtype In Complex With Catalytic Intermediate |
PDB | 3u4a_A | 0 | 113 | 765 | 91 | 722 | A Chain A, Chitinase B From Serratia Marcescens Wildtype In Complex With Catalytic Intermediate |
PDB | 2x41_A | 4e-34 | 53 | 738 | 2 | 674 | A Chain A, Chitinase B From Serratia Marcescens Wildtype In Complex With Catalytic Intermediate |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
(1,4)-β-xylan degradation | 3.2.1.37-RXN | EC-3.2.1.37 | xylan 1,4-β-xylosidase |