y
Basic Information | |
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Species | Brassica rapa |
Cazyme ID | Bra037782 |
Family | GH3 |
Protein Properties | Length: 777 Molecular Weight: 84074.8 Isoelectric Point: 7.4188 |
Chromosome | Chromosome/Scaffold: 09 Start: 3540685 End: 3543874 |
Description | beta-D-xylosidase 4 |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH3 | 88 | 337 | 0 |
GVTRLGIPTYEWWSEALHGVSYVGPGTHFSGLVPGATSFPQVILTAASFNVSLFQAIGKVVSTEARAMYNVGLAGLTYWSPNVNIFRDPRWGRGQETPGE DPLLSSKYASGYVKGLQETDCGDANRLKVAACCKHYTAYDVDNWKGVERYNFNAVVNQQDMDDTYQPPFKSCVVDGNVASVMCSYNQVNGKPTCADPDLL AGVIRGEWKLYGYIVSDCDSVDVLYKNQHYTKTPEEAAAISINAGLDLNC |
Full Sequence |
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Protein Sequence Length: 777 Download |
MGSSSPLTRR NRAPSSVLLT FFCFILCFSH SSNAQTKPVF ACDVDTNPSL AAYGFCNTVL 60 KIEYRVADLV ARLTLQEKIG FLVNKANGVT RLGIPTYEWW SEALHGVSYV GPGTHFSGLV 120 PGATSFPQVI LTAASFNVSL FQAIGKVVST EARAMYNVGL AGLTYWSPNV NIFRDPRWGR 180 GQETPGEDPL LSSKYASGYV KGLQETDCGD ANRLKVAACC KHYTAYDVDN WKGVERYNFN 240 AVVNQQDMDD TYQPPFKSCV VDGNVASVMC SYNQVNGKPT CADPDLLAGV IRGEWKLYGY 300 IVSDCDSVDV LYKNQHYTKT PEEAAAISIN AGLDLNCGSF LGQHTEAAVK AGLVSEAAIN 360 KAISNNFLTL MRLGFFDGDP KKQIYGGLGP KDVCTPANQE LAAEAARQGI VLLKNTGCLP 420 LSHTTIKSLA VIGPNANVTK TMIGNYEGTP CKYTTPLQGL AGTVPTTYLQ GCSNVACAVA 480 DVEGATKLAA DADVTMLVMG ADQSIEAESR DRVDLNLPGQ QQELVTQVAK AAKGPVLLVI 540 MSGGGFDITF AKNDPKIAGI LWVGYPGESG GIAIADVIFG RYNPSGRLPM TWYPQSYVEK 600 VPMTNMNMRP DTSNGYPGRT YRFYTGETVY SFGDGLSYTK FSHSLVKAPR VVSLRLEENH 660 VCRSSECQSL DAVGPHCENT VSGFEVQVKV RNGGEREGVH TVFLFTTPPE VHGAPRKHLL 720 GFEKIRLGKM EEAVVKFKVD VCKDLSVVDE IGKRKIGLGQ HRLHVGDLKH SLSIRI* 780 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG1472 | BglX | 6.0e-54 | 90 | 473 | 394 | + Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] | ||
pfam01915 | Glyco_hydro_3_C | 3.0e-58 | 410 | 639 | 238 | + Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933. | ||
pfam00933 | Glyco_hydro_3 | 5.0e-63 | 74 | 365 | 322 | + Glycosyl hydrolase family 3 N terminal domain. | ||
PRK15098 | PRK15098 | 3.0e-80 | 41 | 741 | 791 | + beta-D-glucoside glucohydrolase; Provisional | ||
PLN03080 | PLN03080 | 0 | 18 | 776 | 777 | + Probable beta-xylosidase; Provisional |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAE44362.1 | 0 | 1 | 776 | 1 | 780 | alpha-L-arabinofuranosidase [Raphanus sativus] |
RefSeq | NP_196535.1 | 0 | 7 | 776 | 1 | 773 | BXL3 (beta-xylosidase 3); hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] |
RefSeq | NP_201262.1 | 0 | 1 | 776 | 1 | 784 | XYL4; hydrolase, hydrolyzing O-glycosyl compounds / xylan 1,4-beta-xylosidase [Arabidopsis thaliana] |
RefSeq | XP_002264183.1 | 0 | 21 | 776 | 206 | 966 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002513707.1 | 0 | 24 | 776 | 25 | 777 | Beta-glucosidase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3u48_B | 0 | 124 | 739 | 91 | 696 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 3u48_A | 0 | 124 | 739 | 91 | 696 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 3u4a_B | 0 | 124 | 739 | 91 | 696 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 3u4a_A | 0 | 124 | 739 | 91 | 696 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2x41_A | 5e-37 | 65 | 739 | 3 | 676 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
(1,4)-β-xylan degradation | 3.2.1.37-RXN | EC-3.2.1.37 | xylan 1,4-β-xylosidase |