y
Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.009G088800.1 |
Family | GH3 |
Protein Properties | Length: 530 Molecular Weight: 58216.9 Isoelectric Point: 6.5789 |
Chromosome | Chromosome/Scaffold: 09 Start: 8194289 End: 8196828 |
Description | Glycosyl hydrolase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH3 | 68 | 197 | 9.7e-25 |
GMGQVVSNEARTMYNVGLAGLTYRSPTIDVFCDPRRDRGQETPGEDPLVVSKYVDNYHYTAYDLDKWKGVDRFHFDTKVTKKDLVGTFQPLFRSCVEEGH VSSVMCSYNRVNGTPTCADSDLLKGVIKGQ |
Full Sequence |
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Protein Sequence Length: 530 Download |
NIPEMSQFPF CDASLSHENR TKDFISRLTL QEKVQQLGNH AAGVSRLGVP AYKWWSEALH 60 GMASVGYGMG QVVSNEARTM YNVGLAGLTY RSPTIDVFCD PRRDRGQETP GEDPLVVSKY 120 VDNYHYTAYD LDKWKGVDRF HFDTKVTKKD LVGTFQPLFR SCVEEGHVSS VMCSYNRVNG 180 TPTCADSDLL KGVIKGQRLN MNCGDFLPRY TENAVKLNKI EESIIDRALI YSYIVPMRLG 240 YFDGDPQFHP FGNLGPSDVC SEEHQKLALN VAKQGIVLLD NNEALPLSKN ATKYLAVIGP 300 NGLHKYISSV TYEARCPFIN CTGESLIGAA TKAATTSDVV VLVVGLDQSI KQKDLDRENL 360 IEVFNATNGK VILVIMSASP IDISFAKNES KIGGILCVGY PDQAGGDVVA QVIFGDHDDP 420 AGGSSFTWYP KEYSDQVNMR ANSTDDFPGK TYSYSTFSEF VISAPSALPV PLKFFSQTKQ 480 HSLVYSSKQD PKPNGQAIDI YSVNCTNLQL GLVIGMRNNG TSRGNKSMK* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG1472 | BglX | 3.0e-16 | 15 | 301 | 373 | + Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] | ||
PRK15098 | PRK15098 | 1.0e-20 | 3 | 422 | 603 | + beta-D-glucoside glucohydrolase; Provisional | ||
pfam00933 | Glyco_hydro_3 | 6.0e-23 | 29 | 197 | 233 | + Glycosyl hydrolase family 3 N terminal domain. | ||
pfam01915 | Glyco_hydro_3_C | 5.0e-27 | 276 | 454 | 219 | + Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933. | ||
PLN03080 | PLN03080 | 4.0e-152 | 3 | 524 | 674 | + Probable beta-xylosidase; Provisional |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAB02547.1 | 0 | 3 | 525 | 34 | 685 | beta-1,4-xylosidase [Arabidopsis thaliana] |
EMBL | CAN82161.1 | 0 | 3 | 524 | 34 | 701 | hypothetical protein [Vitis vinifera] |
RefSeq | NP_188596.1 | 0 | 3 | 525 | 34 | 685 | glycosyl hydrolase family 3 protein [Arabidopsis thaliana] |
RefSeq | XP_002264114.1 | 0 | 3 | 524 | 58 | 725 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002527511.1 | 0 | 1 | 525 | 30 | 699 | Beta-glucosidase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3ut0_D | 0.00000000007 | 54 | 465 | 107 | 619 | A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp |
PDB | 3ut0_C | 0.00000000007 | 54 | 465 | 107 | 619 | A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp |
PDB | 3ut0_B | 0.00000000007 | 54 | 465 | 107 | 619 | A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp |
PDB | 3ut0_A | 0.00000000007 | 54 | 465 | 107 | 619 | A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp |
PDB | 3usz_A | 0.00000000007 | 54 | 465 | 107 | 619 | A Chain A, Crystal Structure Of Truncated Exo-1,31,4-Beta-Glucanase (Exop) From Pseudoalteromonas Sp. Bb1 |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
(1,4)-β-xylan degradation | 3.2.1.37-RXN | EC-3.2.1.37 | xylan 1,4-β-xylosidase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
ES793662 | 317 | 170 | 448 | 0 |
CO125420 | 271 | 221 | 453 | 0 |
EX920612 | 231 | 19 | 197 | 0 |
DK486018 | 230 | 1 | 176 | 0 |
EE185658 | 264 | 63 | 268 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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