y
Basic Information | |
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Species | Setaria italica |
Cazyme ID | Si016356m |
Family | GH3 |
Protein Properties | Length: 789 Molecular Weight: 85232.6 Isoelectric Point: 6.3457 |
Chromosome | Chromosome/Scaffold: 1 Start: 38294513 End: 38298930 |
Description | Glycosyl hydrolase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH3 | 85 | 338 | 0 |
AVPRLGVPAYKWWSEALHGVSDHGRGVHLSGPLRAATSFPQVILTAASFNPHLWYRIGQVIGVEARAVYNNGQAEGLTFWAPNINVFRDPRWGRGQETPG EDPTMTGKYAAVFVRGVQGYAIAGPVNSTDLEASACCKHFTAYDLENWKGVTRYVFDAQVTVQDLEDTYNPPFKSCVEDGHASGIMCSYNRVNGVPTCAD YNLLSKTARQNWGFYGYITSDCDAVSIIHDAQGYAKTAEDAVADVLKAGMDVNC |
Full Sequence |
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Protein Sequence Length: 789 Download |
MGSRARSSLH VAALALLLLQ LLALAPPPHA AVAAASEPPY TCGAGAPPNI PFCDRSLPIE 60 RRVADLVARM TVEEKISQLG DESPAVPRLG VPAYKWWSEA LHGVSDHGRG VHLSGPLRAA 120 TSFPQVILTA ASFNPHLWYR IGQVIGVEAR AVYNNGQAEG LTFWAPNINV FRDPRWGRGQ 180 ETPGEDPTMT GKYAAVFVRG VQGYAIAGPV NSTDLEASAC CKHFTAYDLE NWKGVTRYVF 240 DAQVTVQDLE DTYNPPFKSC VEDGHASGIM CSYNRVNGVP TCADYNLLSK TARQNWGFYG 300 YITSDCDAVS IIHDAQGYAK TAEDAVADVL KAGMDVNCGS YVQQHGASAL QQGKITEQDI 360 DRALHNLFAV RMRLGLFNGD PRRNRYGDIG PDQVCTQEHQ NLALEAAQDG IVLLKNDAGA 420 LPLSKSKVTS LGVIGFNANN AERLLGNYFG PPCVTVTPLQ VLQGYVKDTR FAAGCNAAAC 480 NVTAIPEAVQ VASSVDSVVL FMGLDQDQER EEIDRLDLTL PGQQQSLIES VANAANKPVI 540 LVLLCGGPVD VSFAKTNPKI GAILWAGYPG EAGGMAIAQV LFGEHNPGGR LPVTWYPQDF 600 TKVPMTDMRM RADPATGYPG RTYRFYRGPT VFDFGYGLSY SKYSHRFVAS GTKPPSMSDI 660 AGLKALETTS AAGAAMYDVE AMGSEACERL KFPAVVRVQN HGPMDGKHPV LVFLRWPNAT 720 DDGSGRPARQ LIGFRTLHLR AMQTAHVEFE VSPCKHFSRA SEDGRKVIDQ GSHIVMVGED 780 EFEMSFMA* 840 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG1472 | BglX | 1.0e-52 | 84 | 442 | 364 | + Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] | ||
pfam01915 | Glyco_hydro_3_C | 2.0e-54 | 411 | 641 | 237 | + Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933. | ||
pfam00933 | Glyco_hydro_3 | 7.0e-61 | 71 | 363 | 323 | + Glycosyl hydrolase family 3 N terminal domain. | ||
PRK15098 | PRK15098 | 2.0e-72 | 36 | 753 | 800 | + beta-D-glucoside glucohydrolase; Provisional | ||
PLN03080 | PLN03080 | 0 | 36 | 785 | 762 | + Probable beta-xylosidase; Provisional |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAK38482.1 | 0 | 35 | 788 | 29 | 777 | beta-D-xylosidase [Hordeum vulgare] |
GenBank | EEC74020.1 | 0 | 1 | 786 | 1 | 772 | hypothetical protein OsI_08964 [Oryza sativa Indica Group] |
RefSeq | NP_001048140.1 | 0 | 45 | 786 | 39 | 778 | Os02g0752200 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001130324.1 | 0 | 1 | 788 | 1 | 780 | hypothetical protein LOC100191418 [Zea mays] |
RefSeq | XP_002452540.1 | 0 | 34 | 788 | 34 | 784 | hypothetical protein SORBIDRAFT_04g027700 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3u48_B | 0 | 121 | 778 | 91 | 722 | A Chain A, Crystal Structure Of The Tartronic Semialdehyde Reductase From Salmonella Typhimurium Lt2 |
PDB | 3u48_A | 0 | 121 | 778 | 91 | 722 | A Chain A, Crystal Structure Of The Tartronic Semialdehyde Reductase From Salmonella Typhimurium Lt2 |
PDB | 3u4a_B | 0 | 121 | 778 | 91 | 722 | A Chain A, Crystal Structure Of The Tartronic Semialdehyde Reductase From Salmonella Typhimurium Lt2 |
PDB | 3u4a_A | 0 | 121 | 778 | 91 | 722 | A Chain A, Crystal Structure Of The Tartronic Semialdehyde Reductase From Salmonella Typhimurium Lt2 |
PDB | 2x41_A | 2.00386e-43 | 62 | 778 | 3 | 699 | A Chain A, Crystal Structure Of The Tartronic Semialdehyde Reductase From Salmonella Typhimurium Lt2 |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
(1,4)-β-xylan degradation | 3.2.1.37-RXN | EC-3.2.1.37 | xylan 1,4-β-xylosidase |