y
Basic Information | |
---|---|
Species | Gossypium raimondii |
Cazyme ID | Gorai.005G093200.1 |
Family | GH3 |
Protein Properties | Length: 804 Molecular Weight: 88724.5 Isoelectric Point: 9.0671 |
Chromosome | Chromosome/Scaffold: 05 Start: 12887286 End: 12890150 |
Description | Glycosyl hydrolase family protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH3 | 103 | 359 | 0 |
SIPRLGIPAYQWWSEALHGVAYSLRVTQGIRFNGTIQSATSFPQVILTAASFDAHLWYRIAQAIGIEARAIYNAGQAMGMTFWAPNINIYRDPRWGRGQE TPGEDPLVSGKYAVSFVRGIQGDSFEGGKLGQHLQASACCKHFTAYDLDNWKGVKRYVFNAKVSLQDLADTYQPPFQSCIQQGKASGIMCAYNRVNGVPN CADYNLLSKTARGQWGFNGYITSDCDAVAIIHEDQGYAKLPEDAVADVLKAGMDVNC |
Full Sequence |
---|
Protein Sequence Length: 804 Download |
MQQSSHTTSL SIRSFQFCSN NSVTFTNMKL PTLSVLYLIH LTSLLLILAE STQPPFSCDI 60 SDPRTKSYPF CKTTLPITQR VQDLVSRLTL DEKISQLVNS VSSIPRLGIP AYQWWSEALH 120 GVAYSLRVTQ GIRFNGTIQS ATSFPQVILT AASFDAHLWY RIAQAIGIEA RAIYNAGQAM 180 GMTFWAPNIN IYRDPRWGRG QETPGEDPLV SGKYAVSFVR GIQGDSFEGG KLGQHLQASA 240 CCKHFTAYDL DNWKGVKRYV FNAKVSLQDL ADTYQPPFQS CIQQGKASGI MCAYNRVNGV 300 PNCADYNLLS KTARGQWGFN GYITSDCDAV AIIHEDQGYA KLPEDAVADV LKAGMDVNCG 360 TYLKKYTKSA VEKRKLPVSK IDRALHNLFS VRIRLGLFDG NPVKQPYGTI GSDKVCSQEH 420 RNLALEAARN GIVLLKNTDK LLPLSKTKTT SLAVIGPNAN SAKTFVGNYA GPPCKPVTPL 480 QGLQSYVKDT RFHQGCNAVN CSSAFIAQSV KIAKGTDHVV LVMGLDQTQE SEDHDRVDLL 540 LPPKQQNLIS RIARVAKNPV ILVLLSGGPV DISFAKNDQH IGSILWAGYP GEAGGRALAE 600 IIFGDHNPAS NLYTGGRLPV TWYPQSYVNV PMTDMRMRPE PSSSYPGRTY RFYQGPKVFE 660 FGYGLSYSNY TYEILPVTQN RVHIMVESSN PHRYLPVSEM GDEVCEKMKY TVKVRVKNHG 720 AMAGKHPMLL FVGRPKMVNG RPVRQLVAFQ SVNLNAGERA DVEFELRPCE HLSSAKKDGS 780 MVIEEGSYLL SIGDKESEIQ VVK* 840 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG1472 | BglX | 1.0e-51 | 92 | 497 | 411 | + Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] | ||
pfam01915 | Glyco_hydro_3_C | 1.0e-52 | 432 | 668 | 243 | + Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933. | ||
pfam00933 | Glyco_hydro_3 | 3.0e-61 | 89 | 384 | 325 | + Glycosyl hydrolase family 3 N terminal domain. | ||
PRK15098 | PRK15098 | 3.0e-82 | 81 | 766 | 766 | + beta-D-glucoside glucohydrolase; Provisional | ||
PLN03080 | PLN03080 | 0 | 49 | 801 | 770 | + Probable beta-xylosidase; Provisional |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002285805.1 | 0 | 28 | 802 | 1 | 773 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002302284.1 | 0 | 35 | 802 | 12 | 741 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002302285.1 | 0 | 44 | 802 | 16 | 772 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002306583.1 | 0 | 36 | 802 | 8 | 744 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002513892.1 | 0 | 28 | 802 | 1 | 773 | Periplasmic beta-glucosidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3u48_B | 0 | 75 | 803 | 1 | 732 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
PDB | 3u48_A | 0 | 75 | 803 | 1 | 732 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
PDB | 3u4a_B | 0 | 75 | 803 | 1 | 732 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
PDB | 3u4a_A | 0 | 75 | 803 | 1 | 732 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
PDB | 2x41_A | 0 | 79 | 801 | 2 | 707 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
EST Download unfiltered results here | ||||
---|---|---|---|---|
Hit | Length | Start | End | EValue |
DW486060 | 300 | 72 | 371 | 0 |
CF212861 | 316 | 65 | 380 | 0 |
DY273227 | 316 | 50 | 365 | 0 |
DY910269 | 284 | 50 | 332 | 0 |
FC912034 | 275 | 50 | 324 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
---|