y
Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.008G108100.1 |
Family | GH3 |
Protein Properties | Length: 772 Molecular Weight: 83584.7 Isoelectric Point: 8.342 |
Chromosome | Chromosome/Scaffold: 08 Start: 6879163 End: 6884696 |
Description | beta-xylosidase 1 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH3 | 77 | 324 | 0 |
AAVPRLGIQGYEWWSEALHGVSNVGPGTKFGGAFPGATSFPQVITTAASFNKSLWEEIGRVVSDEARAMFNGGMAGLTYWSPNVNVFRDPRWGRGQETPG EDPVVAGKYAASYVRGLQGNSGFRLKVAACCKHYTAYDLDNWNGVDRYHFNARVSKQDLEDTYDVPFKSCVVEGKVASVMCSYNQVNGKPTCADPNLLKN TIRGEWRLNGYIVSDCDSVGVLYENQHYTATPEEAAAATIKAGLDLDC |
Full Sequence |
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Protein Sequence Length: 772 Download |
MADKINALPC LSFLLFLLCL SNHTVECRAP FACDAKNGLT RSLKFCRVNM PLHVRVRDLI 60 GRLTLQEKIR LLVNNAAAVP RLGIQGYEWW SEALHGVSNV GPGTKFGGAF PGATSFPQVI 120 TTAASFNKSL WEEIGRVVSD EARAMFNGGM AGLTYWSPNV NVFRDPRWGR GQETPGEDPV 180 VAGKYAASYV RGLQGNSGFR LKVAACCKHY TAYDLDNWNG VDRYHFNARV SKQDLEDTYD 240 VPFKSCVVEG KVASVMCSYN QVNGKPTCAD PNLLKNTIRG EWRLNGYIVS DCDSVGVLYE 300 NQHYTATPEE AAAATIKAGL DLDCGPFLAI HTENAVKGGL LNEEDVNMAL ANTITVQMRL 360 GLFDGEPSAQ PFGKLGPRDV CTPAHQQLAL HAAQQGIVLL QNSGRTLPLS RPNLTVAVIG 420 PIADVTVTMI GNYAGVACGY TTPLQGISRY AKTIHQSGCI DVACNGNQQF GMAEAAASQA 480 DATVLVMGLD QSIEAEFRDR KDLLLPGYQQ ELISRVARAS RGPTILVLMS GGPIDVSFAK 540 NDPRIGAILW AGYPGQAGGA AIADVLFGTT NPGGKLPMTW YPQDYLAKVP MTNMGMRADP 600 SRGYPGRTYR FYKGPVVFPF GHGMSYTTFA HSLVQAPQEV AVPFTSLYAL QNTTAARNSI 660 RVSHANCEPL VLGVHIDVKN TGDMDGTQTL LVFSSPPEGK WSANKKLIGF EKVHIVAGSK 720 KRVKIDIPVC KHLSVVDRFG IRRLPIGKHD LHIGDLKHSI SLQANLEEIK S* 780 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG1472 | BglX | 9.0e-49 | 74 | 459 | 393 | + Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] | ||
pfam00933 | Glyco_hydro_3 | 3.0e-60 | 59 | 347 | 296 | + Glycosyl hydrolase family 3 N terminal domain. | ||
pfam01915 | Glyco_hydro_3_C | 1.0e-64 | 397 | 628 | 239 | + Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933. | ||
PRK15098 | PRK15098 | 1.0e-70 | 114 | 727 | 676 | + beta-D-glucoside glucohydrolase; Provisional | ||
PLN03080 | PLN03080 | 0 | 45 | 764 | 743 | + Probable beta-xylosidase; Provisional |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAS17751.2 | 0 | 11 | 771 | 9 | 772 | beta xylosidase [Fragaria x ananassa] |
DDBJ | BAG28345.1 | 0 | 19 | 745 | 16 | 743 | arabinofuranosidase [Citrus unshiu] |
RefSeq | XP_002311398.1 | 0 | 12 | 766 | 1 | 755 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002316021.1 | 0 | 1 | 771 | 1 | 768 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002519194.1 | 0 | 23 | 770 | 34 | 781 | Periplasmic beta-glucosidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3u48_B | 0 | 114 | 727 | 91 | 696 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
PDB | 3u48_A | 0 | 114 | 727 | 91 | 696 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
PDB | 3u4a_B | 0 | 114 | 727 | 91 | 696 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
PDB | 3u4a_A | 0 | 114 | 727 | 91 | 696 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
PDB | 2x41_A | 1.96182e-44 | 55 | 766 | 3 | 711 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
(1,4)-β-xylan degradation | 3.2.1.37-RXN | EC-3.2.1.37 | xylan 1,4-β-xylosidase |