y
Basic Information | |
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Species | Citrus clementina |
Cazyme ID | Ciclev10000355m |
Family | GH3 |
Protein Properties | Length: 774 Molecular Weight: 83136.7 Isoelectric Point: 7.7211 |
Chromosome | Chromosome/Scaffold: 5 Start: 22306732 End: 22309822 |
Description | beta-D-xylosidase 4 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH3 | 86 | 335 | 0 |
SVSRLGIPKYEWWSEALHGVSYVGPGTHFSNVVPGATSFPQVILTAASFNASLFQAIGKVVSTEARAMYNVGLAGLTFWSPNINIFRDPRWGRGQETPGE DPLLASKYATGYVKGLQQTDGGSPNRLKVAACCKHYTAYDLDNWKGTDRYHFNAMVTKQDLDDTFQPPFKSCVIDGNVASVMCSYNQVNGKPTCADPDLL AGVIRGQWKLNGYIVSDCDSVDVLYNSQHYTKTPEEAAAKSILAGLDLNC |
Full Sequence |
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Protein Sequence Length: 774 Download |
MAPAQNRNRA PKVSVLFLFL TYCSLQHSSS SAQSSPVFAC DVVSNPSLAS LGFCNTSLGI 60 DLRVGDLVKR LTLQEKITFL VDSAGSVSRL GIPKYEWWSE ALHGVSYVGP GTHFSNVVPG 120 ATSFPQVILT AASFNASLFQ AIGKVVSTEA RAMYNVGLAG LTFWSPNINI FRDPRWGRGQ 180 ETPGEDPLLA SKYATGYVKG LQQTDGGSPN RLKVAACCKH YTAYDLDNWK GTDRYHFNAM 240 VTKQDLDDTF QPPFKSCVID GNVASVMCSY NQVNGKPTCA DPDLLAGVIR GQWKLNGYIV 300 SDCDSVDVLY NSQHYTKTPE EAAAKSILAG LDLNCGSFLG KHTEAAVKAG LVNESAIDNA 360 ISNNFATLMR LGFFDGHPSK QPYGQLGPKD VCTQANQDLA LDAARQGIVL LKNTAGSLPL 420 SPTAIKNLAV IGPNANVTKT MIGNYEGTPC KYTTPLQGLA AVVATTYQAG CSNVQCGTAQ 480 VDDAKKAAAS ADATVLVMGA DQSIEAEGRD RLDLLLPGQQ QLLITEVAKV AKGPVILIIM 540 SGGGFDVSFA KNDPKIKSIL WVGYPGQAGG AAIADVCFGR YNPSGRLPMT WYPQSYVEKV 600 PMTNMNMRPD ASNGYPGRTY RFYTGETVYA FGDGLSYSTM NHELVRAPKI VAIPLEEGHV 660 CYSSNCKSVD AVEQSCQNLN LDIHLRVKNN ASISGGHTIF LFSTPPSVHK SPQKHLLAFE 720 KVFLKGQEEA LVSFKVDACK DLSVVDELGN RKLALGDHLL HVGNLKHSLT IRI* 780 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam01915 | Glyco_hydro_3_C | 1.0e-46 | 408 | 639 | 239 | + Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933. | ||
COG1472 | BglX | 1.0e-57 | 88 | 472 | 391 | + Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] | ||
pfam00933 | Glyco_hydro_3 | 2.0e-63 | 81 | 363 | 287 | + Glycosyl hydrolase family 3 N terminal domain. | ||
PRK15098 | PRK15098 | 2.0e-67 | 39 | 737 | 789 | + beta-D-glucoside glucohydrolase; Provisional | ||
PLN03080 | PLN03080 | 0 | 16 | 773 | 779 | + Probable beta-xylosidase; Provisional |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI39114.1 | 0 | 8 | 773 | 6 | 774 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002264183.1 | 0 | 10 | 773 | 200 | 966 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002268626.1 | 0 | 33 | 773 | 28 | 768 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002298197.1 | 0 | 35 | 773 | 1 | 741 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002513707.1 | 0 | 32 | 773 | 35 | 777 | Beta-glucosidase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3u48_B | 8.00141e-43 | 122 | 736 | 91 | 696 | A Chain A, X-Ray Crystal Structure Of Tdp-Vancosaminyltransferase Gtfd As A Complex With Tdp And The Natural Substrate, Desvancosaminyl Vancomycin. |
PDB | 3u48_A | 8.00141e-43 | 122 | 736 | 91 | 696 | A Chain A, X-Ray Crystal Structure Of Tdp-Vancosaminyltransferase Gtfd As A Complex With Tdp And The Natural Substrate, Desvancosaminyl Vancomycin. |
PDB | 3u4a_B | 4.99983e-42 | 122 | 736 | 91 | 696 | A Chain A, X-Ray Crystal Structure Of Tdp-Vancosaminyltransferase Gtfd As A Complex With Tdp And The Natural Substrate, Desvancosaminyl Vancomycin. |
PDB | 3u4a_A | 4.99983e-42 | 122 | 736 | 91 | 696 | A Chain A, X-Ray Crystal Structure Of Tdp-Vancosaminyltransferase Gtfd As A Complex With Tdp And The Natural Substrate, Desvancosaminyl Vancomycin. |
PDB | 2x41_A | 2e-36 | 63 | 642 | 3 | 605 | A Chain A, X-Ray Crystal Structure Of Tdp-Vancosaminyltransferase Gtfd As A Complex With Tdp And The Natural Substrate, Desvancosaminyl Vancomycin. |