y
Basic Information | |
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Species | Brachypodium distachyon |
Cazyme ID | Bradi5g23470.1 |
Family | GH3 |
Protein Properties | Length: 773 Molecular Weight: 81712.8 Isoelectric Point: 6.4604 |
Chromosome | Chromosome/Scaffold: 5 Start: 25394449 End: 25402147 |
Description | beta-D-xylosidase 4 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH3 | 85 | 332 | 0 |
ARLGIPAYEWWSEALHGVSYVGPGTRFSPLVPGATSFPQPILTAASFNASLFRAIGEVVSNEARAMHNVGLAGLTFWSPNINIFRDPRWGRGQETPGEDP LLASRYAVGYVSGLQDAGADADGPLKVAACCKHYTAYDVDNWKGVERYTFDAKVSQQDLDDTFQPPFKSCVIDGKVASVMCSYNKVNGKPTCADKDLLSG VIRGDWKLNGYIVSDCDSVDVLYSQQHYTKTPEEAAAITIKSGLDLNC |
Full Sequence |
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Protein Sequence Length: 773 Download |
MAAPHPFQAV LMPLALSLSL ALLCSSNVAR AQTPVFACDA ANSTVAGYAF CDRAKSASAR 60 AADLVSRLTL ADKVGFLVNK QPALARLGIP AYEWWSEALH GVSYVGPGTR FSPLVPGATS 120 FPQPILTAAS FNASLFRAIG EVVSNEARAM HNVGLAGLTF WSPNINIFRD PRWGRGQETP 180 GEDPLLASRY AVGYVSGLQD AGADADGPLK VAACCKHYTA YDVDNWKGVE RYTFDAKVSQ 240 QDLDDTFQPP FKSCVIDGKV ASVMCSYNKV NGKPTCADKD LLSGVIRGDW KLNGYIVSDC 300 DSVDVLYSQQ HYTKTPEEAA AITIKSGLDL NCGDFLAKHT VAAVQAGNLS ESDVDRAITN 360 NFIMLMRLGF FDGDPRKLAY GSLGPKDVCT SSNQELARET ARQGIVLLKN DGALPLSAKS 420 IKSMAVIGPN ANASFTMIGN YEGTPCKYTT PLHGLGNNVA TVYQPGCSNV GCSGNSLQLS 480 AATAAAASAD VTVLVVGADQ SIEREALDRT SLLLPGQQPD LISAVANASK GHVILVVMSG 540 GPFDISFAKA SDKISAILWV GYPGEAGGAA IADIIFGKYN PSGRLPVTWY PASFADKVPM 600 TDMRMRPDNS TGYPGRTYRF YTGETVFAFG DGLSYTTMSH NLVAAPPSEV SMQLAEGHAC 660 HTKECASVEA AGDHCEGMAF EVRLRVHNTG EMAGAHTVLL FSSPPAVHNA PAKHLLGFEK 720 LNLEPGQAGV AAFKVDVCKD LSVVDELGNR KVALGGHTLH VGDLKHTLNL GV* 780 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam01915 | Glyco_hydro_3_C | 6.0e-39 | 405 | 637 | 239 | + Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933. | ||
COG1472 | BglX | 6.0e-57 | 79 | 468 | 399 | + Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] | ||
pfam00933 | Glyco_hydro_3 | 3.0e-62 | 78 | 360 | 287 | + Glycosyl hydrolase family 3 N terminal domain. | ||
PRK15098 | PRK15098 | 6.0e-63 | 83 | 737 | 701 | + beta-D-glucoside glucohydrolase; Provisional | ||
PLN03080 | PLN03080 | 0 | 27 | 768 | 761 | + Probable beta-xylosidase; Provisional |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAK38481.1 | 0 | 29 | 772 | 32 | 777 | alpha-L-arabinofuranosidase/beta-D-xylosidase isoenzyme ARA-I [Hordeum vulgare] |
EMBL | CAE03635.1 | 0 | 135 | 772 | 204 | 839 | OSJNBb0003B01.27 [Oryza sativa (japonica cultivar-group)] |
GenBank | EEE61783.1 | 0 | 26 | 772 | 21 | 771 | hypothetical protein OsJ_16354 [Oryza sativa Japonica Group] |
RefSeq | NP_001054038.1 | 0 | 26 | 772 | 21 | 765 | Os04g0640700 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002448619.1 | 0 | 25 | 772 | 23 | 767 | hypothetical protein SORBIDRAFT_06g030270 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3u48_B | 0 | 119 | 735 | 91 | 696 | B Chain B, Crystal Structure Of S54-10 Antibody In Complex With Antigen Kdo(2.4)kdo(2.4)kdo |
PDB | 3u48_A | 0 | 119 | 735 | 91 | 696 | B Chain B, Crystal Structure Of S54-10 Antibody In Complex With Antigen Kdo(2.4)kdo(2.4)kdo |
PDB | 3u4a_B | 0 | 119 | 735 | 91 | 696 | B Chain B, Crystal Structure Of S54-10 Antibody In Complex With Antigen Kdo(2.4)kdo(2.4)kdo |
PDB | 3u4a_A | 0 | 119 | 735 | 91 | 696 | B Chain B, Crystal Structure Of S54-10 Antibody In Complex With Antigen Kdo(2.4)kdo(2.4)kdo |
PDB | 2x41_A | 6.99949e-42 | 60 | 771 | 3 | 714 | B Chain B, Crystal Structure Of S54-10 Antibody In Complex With Antigen Kdo(2.4)kdo(2.4)kdo |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
(1,4)-β-xylan degradation | 3.2.1.37-RXN | EC-3.2.1.37 | xylan 1,4-β-xylosidase |