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Basic Information | |
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Species | Sorghum bicolor |
Cazyme ID | Sb0010s007570.1 |
Family | GH3 |
Protein Properties | Length: 751 Molecular Weight: 80332.8 Isoelectric Point: 6.8487 |
Chromosome | Chromosome/Scaffold: 10 Start: 1613709 End: 1618156 |
Description | Glycosyl hydrolase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH3 | 64 | 306 | 0 |
AGVPRLGVPPYKWWSEGLHGLAFWGHGMRFNGTVTGVTSFPQVLLTTASFDDGLWFRIGQAIGREARALYNLGQAEGLTIWSPNVNIFRDPRWGRGQETP GEDPAVASKYAVAFVRGIQGSSAAGAAAPLQASACCKHATAYDLEDWNGVARYNFDARVTAQDLADTFNPPFQSCVVDGKATCVMCAYTGINGVPACASS DLLTKTFRGAWGHDGYVSSDCDAVAIMHDAQRYVPTPEDTVAV |
Full Sequence |
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Protein Sequence Length: 751 Download |
MLLLAAVFFS SAVASDPLFS CGPSSPSRAY PFCDRSLPAA RRAADLVSRL TVAEKVSQLG 60 DEAAGVPRLG VPPYKWWSEG LHGLAFWGHG MRFNGTVTGV TSFPQVLLTT ASFDDGLWFR 120 IGQAIGREAR ALYNLGQAEG LTIWSPNVNI FRDPRWGRGQ ETPGEDPAVA SKYAVAFVRG 180 IQGSSAAGAA APLQASACCK HATAYDLEDW NGVARYNFDA RVTAQDLADT FNPPFQSCVV 240 DGKATCVMCA YTGINGVPAC ASSDLLTKTF RGAWGHDGYV SSDCDAVAIM HDAQRYVPTP 300 EDTVAVALKE HGMAAIQQGK MTEKDVDKAL TNLFAVRMRL GHFDGDPRGN ALYGHLGAAD 360 VCTADHKNLA LEAAQDGIVL LKNDAGILPL DRSAMGSAAV IGHNANDALV LRGNYFGPAC 420 ETTTPLQGVQ SYVSNVRFLA GCSSAACGYA ATGQAAALAS SSEYVFLFMG LSQDQEKEGL 480 DRTSLLLPGK QQSLITAVAS AAKRPVILVL LTGGPVDITF AQSNPKIGAI LWAGYPGQAG 540 GLAIARVLFG DHNPSGRLPV TWYPEEFTKV PMTDMRMRAD PANGYPGRSY RFYRGNTIYK 600 FGYGLSYSKF SRQLVTGGKN QLASLLAGLS ATTKDDDATS YYHVDDIGAD GCEQLRFPAE 660 VEVQNHGPMD GKHSVLMFLR WPNATDGRPV SQLIGFTSQH IKAGEKANVR FDVRPCEHFS 720 RARADGKKVI DRGSHFLMVG KEEVEVSFEA * 780 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG1472 | BglX | 5.0e-43 | 62 | 407 | 362 | + Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] | ||
pfam00933 | Glyco_hydro_3 | 2.0e-50 | 63 | 336 | 290 | + Glycosyl hydrolase family 3 N terminal domain. | ||
pfam01915 | Glyco_hydro_3_C | 1.0e-52 | 378 | 608 | 237 | + Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933. | ||
PRK15098 | PRK15098 | 3.0e-60 | 89 | 713 | 682 | + beta-D-glucoside glucohydrolase; Provisional | ||
PLN03080 | PLN03080 | 0 | 17 | 750 | 758 | + Probable beta-xylosidase; Provisional |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAX92971.1 | 0 | 16 | 750 | 24 | 771 | beta-D-xylosidase [Oryza sativa Japonica Group] |
GenBank | EAY80660.1 | 0 | 16 | 750 | 24 | 771 | hypothetical protein OsI_35838 [Oryza sativa Indica Group] |
RefSeq | NP_001067726.1 | 0 | 17 | 750 | 35 | 782 | Os11g0297800 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002489304.1 | 0 | 1 | 750 | 1 | 750 | hypothetical protein SORBIDRAFT_0010s007570 [Sorghum bicolor] |
RefSeq | XP_002489310.1 | 0 | 13 | 750 | 22 | 772 | hypothetical protein SORBIDRAFT_0010s010920 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3u48_B | 0 | 101 | 740 | 91 | 722 | B Chain B, Agglutinin From Ricinus Communis With Galactoaza |
PDB | 3u48_A | 0 | 101 | 740 | 91 | 722 | B Chain B, Agglutinin From Ricinus Communis With Galactoaza |
PDB | 3u4a_B | 0 | 101 | 740 | 91 | 722 | B Chain B, Agglutinin From Ricinus Communis With Galactoaza |
PDB | 3u4a_A | 0 | 101 | 740 | 91 | 722 | B Chain B, Agglutinin From Ricinus Communis With Galactoaza |
PDB | 2x41_A | 4e-32 | 42 | 740 | 3 | 699 | B Chain B, Agglutinin From Ricinus Communis With Galactoaza |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
(1,4)-β-xylan degradation | 3.2.1.37-RXN | EC-3.2.1.37 | xylan 1,4-β-xylosidase |