y
Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00059428m |
Family | GH14 |
Protein Properties | Length: 359 Molecular Weight: 39684.5 Isoelectric Point: 6.2877 |
Chromosome | Chromosome/Scaffold: 0151226 Start: 26 End: 1784 |
Description | beta-amylase 1 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH14 | 2 | 317 | 0 |
EEDRDLCYTDQWGRRNCEYVSLGCDAMPVLKGRTPVECYTDFMRAFRDHFADYLGNTIVEIQVGMGPAGELRYPSYPESNGTWRFPGIGAFQCNDRYMLS SLKEAAVAAGKPEWGHGGPTDAGSYNNWPEDTIFFRRENGGWSTEYGDFFLSWYSRMLLEHGDRVLTGAASVFSASPVAISVKVAGIHWHYGTRSHAPEL TAGYYNTRHRDGYLPIAWLLARHGAVLNFTCVEMRDHEQPRVAQCMPEALVRQVGAAARAAGAGLAGENALPRYDGAAHDQVVATAAERAAEDRMVAFTY LRMGADLFHPDNWRRF |
Full Sequence |
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Protein Sequence Length: 359 Download |
MEEDRDLCYT DQWGRRNCEY VSLGCDAMPV LKGRTPVECY TDFMRAFRDH FADYLGNTIV 60 EIQVGMGPAG ELRYPSYPES NGTWRFPGIG AFQCNDRYML SSLKEAAVAA GKPEWGHGGP 120 TDAGSYNNWP EDTIFFRREN GGWSTEYGDF FLSWYSRMLL EHGDRVLTGA ASVFSASPVA 180 ISVKVAGIHW HYGTRSHAPE LTAGYYNTRH RDGYLPIAWL LARHGAVLNF TCVEMRDHEQ 240 PRVAQCMPEA LVRQVGAAAR AAGAGLAGEN ALPRYDGAAH DQVVATAAER AAEDRMVAFT 300 YLRMGADLFH PDNWRRFAAF VRRMSGDGLC QEAAEREARG VAQATGSLVR EAAVALRS* 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02905 | PLN02905 | 2.0e-86 | 6 | 329 | 330 | + beta-amylase | ||
PLN02161 | PLN02161 | 2.0e-100 | 4 | 327 | 330 | + beta-amylase | ||
PLN02801 | PLN02801 | 8.0e-122 | 2 | 334 | 341 | + beta-amylase | ||
PLN02803 | PLN02803 | 2.0e-167 | 1 | 328 | 328 | + beta-amylase | ||
PLN00197 | PLN00197 | 0 | 1 | 356 | 364 | + beta-amylase; Provisional |
Gene Ontology | |
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GO Term | Description |
GO:0000272 | polysaccharide catabolic process |
GO:0016161 | beta-amylase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EAY88485.1 | 0 | 1 | 358 | 196 | 556 | hypothetical protein OsI_09956 [Oryza sativa Indica Group] |
GenBank | EAZ16360.1 | 0 | 1 | 358 | 177 | 535 | hypothetical protein OsJ_31822 [Oryza sativa Japonica Group] |
RefSeq | NP_001064798.1 | 0 | 1 | 358 | 177 | 535 | Os10g0465700 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001147532.1 | 0 | 1 | 358 | 187 | 544 | beta-amylase [Zea mays] |
RefSeq | XP_002467119.1 | 0 | 1 | 358 | 189 | 547 | hypothetical protein SORBIDRAFT_01g019850 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2dqx_A | 0 | 2 | 327 | 116 | 444 | A Chain A, Mutant Beta-Amylase (W55r) From Soy Bean |
PDB | 1wdp_A | 0 | 2 | 327 | 116 | 444 | A Chain A, Mutant Beta-Amylase (W55r) From Soy Bean |
PDB | 1q6c_A | 0 | 2 | 327 | 116 | 444 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With Maltose |
PDB | 1bfn_A | 0 | 2 | 327 | 116 | 444 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With Maltose |
PDB | 1q6d_A | 0 | 2 | 327 | 116 | 444 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (M51t) With Increased Ph Optimum |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
starch degradation I | RXN-1827 | EC-3.2.1.2 | β-amylase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO852545 | 357 | 1 | 354 | 0 |
HO779314 | 363 | 1 | 356 | 0 |
HO826564 | 357 | 1 | 354 | 0 |
FL859023 | 254 | 35 | 288 | 0 |
DR821602 | 269 | 21 | 289 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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