y
Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00029549m |
Family | GH14 |
Protein Properties | Length: 462 Molecular Weight: 50683 Isoelectric Point: 5.8487 |
Chromosome | Chromosome/Scaffold: 005992 Start: 12977 End: 15825 |
Description | chloroplast beta-amylase |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH14 | 1 | 410 | 0 |
MLPLDTVGPGGQLSRQRAVAASLMALRGAGVEGVMVDVWWGVVEREGPGRYDWEAYAELVRMVERAGLRLQAVMSFHQCGGNVGDTCNIPLPPWVLEEMS SNPDIVYTDRSGRRNPEYISLGCDTLPVLKGRTPIQVYTDYMRSFRERFSDYLGNVIAEIQVGMGPCGELRYPSYPEANGTWRFPGIGEFQCYDKYMRAS LEAAAVAAGREDWGRGGPHDAGEYKQMPEETGFFRHDGTWSTEYGRFFLEWYSGMLLEHGDRVLAAAEAVFGGTGATLSAKVAGIHWHYGTRSHAAELTA GYYNTRHRNGYAPIARMLAKRGAVLNFTCMEMKDEQQPQHANCSPEQLVRQVKAAAGAAGVELAGENALERYDEAAFSQVVSTARGAGLAAFTYLRMNKT LFDGDNWRQF |
Full Sequence |
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Protein Sequence Length: 462 Download |
MLPLDTVGPG GQLSRQRAVA ASLMALRGAG VEGVMVDVWW GVVEREGPGR YDWEAYAELV 60 RMVERAGLRL QAVMSFHQCG GNVGDTCNIP LPPWVLEEMS SNPDIVYTDR SGRRNPEYIS 120 LGCDTLPVLK GRTPIQVYTD YMRSFRERFS DYLGNVIAEI QVGMGPCGEL RYPSYPEANG 180 TWRFPGIGEF QCYDKYMRAS LEAAAVAAGR EDWGRGGPHD AGEYKQMPEE TGFFRHDGTW 240 STEYGRFFLE WYSGMLLEHG DRVLAAAEAV FGGTGATLSA KVAGIHWHYG TRSHAAELTA 300 GYYNTRHRNG YAPIARMLAK RGAVLNFTCM EMKDEQQPQH ANCSPEQLVR QVKAAAGAAG 360 VELAGENALE RYDEAAFSQV VSTARGAGLA AFTYLRMNKT LFDGDNWRQF VSFVRSMADG 420 GTRPALPRCD TGHSDLYVGF LDASKERKAP EAEGAATAVA L* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02905 | PLN02905 | 7.0e-133 | 1 | 417 | 427 | + beta-amylase | ||
pfam01373 | Glyco_hydro_14 | 2.0e-149 | 1 | 413 | 424 | + Glycosyl hydrolase family 14. This family are beta amylases. | ||
PLN02801 | PLN02801 | 9.0e-177 | 1 | 417 | 428 | + beta-amylase | ||
PLN02803 | PLN02803 | 0 | 1 | 443 | 446 | + beta-amylase | ||
PLN00197 | PLN00197 | 0 | 1 | 420 | 429 | + beta-amylase; Provisional |
Gene Ontology | |
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GO Term | Description |
GO:0000272 | polysaccharide catabolic process |
GO:0016161 | beta-amylase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN62440.1 | 0 | 1 | 446 | 86 | 533 | hypothetical protein [Vitis vinifera] |
RefSeq | NP_001065418.1 | 0 | 1 | 442 | 87 | 528 | Os10g0565200 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002282871.1 | 0 | 1 | 446 | 86 | 533 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002326690.1 | 0 | 1 | 452 | 90 | 544 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002464915.1 | 0 | 1 | 451 | 97 | 547 | hypothetical protein SORBIDRAFT_01g028700 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1wdp_A | 0 | 1 | 417 | 17 | 441 | A Chain A, Structure Of Hexagonal Crystal Form Of Pseudomonas Aeruginosa Rssb |
PDB | 1q6c_A | 0 | 1 | 417 | 17 | 441 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With Maltose |
PDB | 1bfn_A | 0 | 1 | 417 | 17 | 441 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With Maltose |
PDB | 1uko_D | 0 | 1 | 417 | 17 | 441 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant Substituted At Surface Region |
PDB | 1uko_C | 0 | 1 | 417 | 17 | 441 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant Substituted At Surface Region |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
starch degradation I | RXN-1827 | EC-3.2.1.2 | β-amylase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
BU103692 | 448 | 1 | 448 | 0 |
HO794833 | 417 | 34 | 447 | 0 |
HO825836 | 382 | 70 | 448 | 0 |
HO781538 | 343 | 1 | 343 | 0 |
DT944111 | 286 | 39 | 324 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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