y
Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00052483m |
Family | GH14 |
Protein Properties | Length: 441 Molecular Weight: 48563.6 Isoelectric Point: 5.6413 |
Chromosome | Chromosome/Scaffold: 0109250 Start: 796 End: 3438 |
Description | chloroplast beta-amylase |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH14 | 2 | 387 | 0 |
ALRGAGVEGVMVDVWWGVVEREGPGRYDWEAYAELVRMVERAGLRLQAVMSFHQCGGNVGDTCNIPLPPWVLEEMSSNPDIVYTDRSGRRNPEYISLGCD TLPVLKGRTPIQVYTDYMRSFRERFGDYLGNVIAEIQVGMGPCGELRYPSYPEANGTWRFPGIGEFQCYDKYMRASLEAAAMAAGHEEWGRGGPHDAGEY KQMPDETGFFRHDGTWSTEYGRFFLEWYSGMLLEHGDRVLAAAEAVFGGTGATLSAKVAGIHWHYGTRSHAAELTAGYYNTRHRDGYAPIARMLAKRGAV LNFTCMEMKDEQQPQHANCSPEQLVRQVKAAASAAGVELAGENALERYDEAAFSRVMSTARGAGLAAFTYLRMNKTLFDGDNWRQF |
Full Sequence |
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Protein Sequence Length: 441 Download |
MALRGAGVEG VMVDVWWGVV EREGPGRYDW EAYAELVRMV ERAGLRLQAV MSFHQCGGNV 60 GDTCNIPLPP WVLEEMSSNP DIVYTDRSGR RNPEYISLGC DTLPVLKGRT PIQVYTDYMR 120 SFRERFGDYL GNVIAEIQVG MGPCGELRYP SYPEANGTWR FPGIGEFQCY DKYMRASLEA 180 AAMAAGHEEW GRGGPHDAGE YKQMPDETGF FRHDGTWSTE YGRFFLEWYS GMLLEHGDRV 240 LAAAEAVFGG TGATLSAKVA GIHWHYGTRS HAAELTAGYY NTRHRDGYAP IARMLAKRGA 300 VLNFTCMEMK DEQQPQHANC SPEQLVRQVK AAASAAGVEL AGENALERYD EAAFSRVMST 360 ARGAGLAAFT YLRMNKTLFD GDNWRQFVSF VRGMADGGTR PALPRCDTGH SDLYVGFLDA 420 AKERKAPEAE GAATATAVAL * 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02905 | PLN02905 | 1.0e-137 | 3 | 394 | 402 | + beta-amylase | ||
pfam01373 | Glyco_hydro_14 | 2.0e-155 | 1 | 390 | 401 | + Glycosyl hydrolase family 14. This family are beta amylases. | ||
PLN02803 | PLN02803 | 0 | 1 | 420 | 423 | + beta-amylase | ||
PLN00197 | PLN00197 | 0 | 2 | 397 | 405 | + beta-amylase; Provisional | ||
PLN02801 | PLN02801 | 0 | 3 | 394 | 403 | + beta-amylase |
Gene Ontology | |
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GO Term | Description |
GO:0000272 | polysaccharide catabolic process |
GO:0016161 | beta-amylase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAF27255.2 | 0 | 7 | 419 | 116 | 506 | Os10g0565200 [Oryza sativa Japonica Group] |
RefSeq | NP_001065418.1 | 0 | 7 | 419 | 116 | 528 | Os10g0565200 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002282871.1 | 0 | 1 | 423 | 109 | 533 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002326690.1 | 0 | 1 | 429 | 113 | 544 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002464915.1 | 0 | 1 | 428 | 120 | 547 | hypothetical protein SORBIDRAFT_01g028700 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1wdp_A | 0 | 1 | 394 | 40 | 441 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1q6c_A | 0 | 1 | 394 | 40 | 441 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With Maltose |
PDB | 1bfn_A | 0 | 1 | 394 | 40 | 441 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With Maltose |
PDB | 1uko_D | 0 | 1 | 394 | 40 | 441 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant Substituted At Surface Region |
PDB | 1uko_C | 0 | 1 | 394 | 40 | 441 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant Substituted At Surface Region |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
starch degradation I | RXN-1827 | EC-3.2.1.2 | β-amylase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
BU103692 | 425 | 1 | 425 | 0 |
HO794833 | 417 | 11 | 424 | 0 |
HO825836 | 382 | 47 | 425 | 0 |
DT944111 | 286 | 16 | 301 | 0 |
HO624546 | 421 | 3 | 415 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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