y
Basic Information | |
---|---|
Species | Gossypium raimondii |
Cazyme ID | Gorai.008G218300.3 |
Family | GH14 |
Protein Properties | Length: 645 Molecular Weight: 72718.5 Isoelectric Point: 5.8568 |
Chromosome | Chromosome/Scaffold: 08 Start: 50463840 End: 50470692 |
Description | beta-amylase 2 |
View CDS |
External Links |
---|
NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH14 | 223 | 610 | 0 |
YVKLSTGVINNFCQLADPDGVRQELSHMNSLNVDGVIVDCWWGIVECWNPQKYVWSGYRELFNYIREFKMKIQVVMAFHEYGRTDSADVLISLPNWILEI GKENQDIFFTDREGRRTTEFLSWGIDKERVLNGRTGVEVYFDFMRSFRTEFDDLFAEGLISAVEIGLGPSGELRYPSFSERMGWRYPGIGEFQRAAKLRG HSFWARGPDNAGHYNSRPHETGFFCERGDYDSYYGRFFLHWYAQALMDHADNVLSLANLAFEETKIIVKIPAVYWWYKTSSHAAELTAGYYNPTNQDGYS PVFEVLKKHSVTVKFVCYGLQICSYENDEAFADPEGLSWQVLNSVWDRGLKVAGENTLSCYDKEGCLRIIETAKPRNDPDRRHFSFFV |
Full Sequence |
---|
Protein Sequence Length: 645 Download |
MESQPQPQPQ PRRPRGFAAT AAAAAASVSP TGTPSGSAGA STASSGKGKR EREKEKERTK 60 LRERHRRAIT SRMLAGLRQY GNFPLPARAD MNDVLAALAR EAGWTVEPDG TTYRHSPPPQ 120 HQQHLGAFPV RSGESPLTAT SLQNCSVKAT LDCQQPVVRI DDSLSPASLD SVVIAERDTR 180 SEKYPSTSPI NSVECLEADQ LIQDVHSTEH DNDFTGTQYV PVYVKLSTGV INNFCQLADP 240 DGVRQELSHM NSLNVDGVIV DCWWGIVECW NPQKYVWSGY RELFNYIREF KMKIQVVMAF 300 HEYGRTDSAD VLISLPNWIL EIGKENQDIF FTDREGRRTT EFLSWGIDKE RVLNGRTGVE 360 VYFDFMRSFR TEFDDLFAEG LISAVEIGLG PSGELRYPSF SERMGWRYPG IGEFQRAAKL 420 RGHSFWARGP DNAGHYNSRP HETGFFCERG DYDSYYGRFF LHWYAQALMD HADNVLSLAN 480 LAFEETKIIV KIPAVYWWYK TSSHAAELTA GYYNPTNQDG YSPVFEVLKK HSVTVKFVCY 540 GLQICSYEND EAFADPEGLS WQVLNSVWDR GLKVAGENTL SCYDKEGCLR IIETAKPRND 600 PDRRHFSFFV YQQPSPLVQG VICLPDLDYF IKCMHGDITG DLVP* 660 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN00197 | PLN00197 | 4.0e-93 | 220 | 616 | 416 | + beta-amylase; Provisional | ||
PLN02803 | PLN02803 | 1.0e-106 | 220 | 596 | 393 | + beta-amylase | ||
PLN02801 | PLN02801 | 2.0e-131 | 208 | 637 | 447 | + beta-amylase | ||
PLN02705 | PLN02705 | 0 | 68 | 642 | 587 | + beta-amylase | ||
PLN02905 | PLN02905 | 0 | 68 | 642 | 605 | + beta-amylase |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0000272 | polysaccharide catabolic process |
GO:0016161 | beta-amylase activity |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI29216.1 | 0 | 59 | 644 | 19 | 612 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_199343.1 | 0 | 8 | 638 | 35 | 684 | BMY2 (BETA-AMYLASE 2); beta-amylase/ catalytic/ cation binding [Arabidopsis thaliana] |
RefSeq | XP_002270680.1 | 0 | 52 | 644 | 70 | 670 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002304400.1 | 0 | 5 | 636 | 38 | 666 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002519919.1 | 0 | 2 | 636 | 22 | 664 | Beta-amylase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1wdq_A | 0 | 218 | 598 | 10 | 401 | A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of Soybean Beta-Amylase |
PDB | 1wdp_A | 0 | 218 | 598 | 10 | 401 | A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of Soybean Beta-Amylase |
PDB | 1q6c_A | 0 | 218 | 598 | 10 | 401 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With Maltose |
PDB | 1bfn_A | 0 | 218 | 598 | 10 | 401 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With Maltose |
PDB | 1byd_A | 0 | 218 | 598 | 10 | 401 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With Maltose |
EST Download unfiltered results here | ||||
---|---|---|---|---|
Hit | Length | Start | End | EValue |
EB439624 | 285 | 266 | 539 | 0 |
JG649066 | 276 | 264 | 528 | 0 |
HO807244 | 277 | 371 | 636 | 0 |
GO367915 | 286 | 231 | 505 | 0 |
CF210586 | 232 | 414 | 645 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
---|