y
Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00005817m |
Family | GH14 |
Protein Properties | Length: 447 Molecular Weight: 48290.6 Isoelectric Point: 6.1835 |
Chromosome | Chromosome/Scaffold: 0180565 Start: 192 End: 2459 |
Description | beta-amylase 1 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH14 | 160 | 447 | 0 |
FVMMPLDTVRKDGNSLNRRRAVEASLAALKSAGVEGIMVDVWWGIAEAEGPGQYNFNGYMELMEMARKNGLKVQAVMSFHQCGGNVGDSVTIPLPKWVLE EMDKDQDLAYTDRSGRRNYEYVSLGCDALPVLKGRTPIQCYADFMRAFRDHFATYMGNTIVEIQVGMGPAGELRYPSYPESNGTWCFPGIGEFQCYDRYM LSSLKAAAEAVGKPEWGNAGPSDSGSYKNWPEDTPFFRREGGWNTEYGQFFMSWYSQMLLEHGERILSAATGVFTASPGVKISVKVAG |
Full Sequence |
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Protein Sequence Length: 447 Download |
NKTRSQSRSS QQRNPGVPDR LHFRPRGQDP FHSAFLFLGD LIQSPPFASN PSSGAYLQPL 60 LRTMALNLAH QTGAAAAVTA APAAPRSAVV AAASTVAPSA TAPALQAQTV TVDPAPAQAA 120 DSVKPDLAMV CQALVDGGKP EAEHADVAAE VKSKEGVPVF VMMPLDTVRK DGNSLNRRRA 180 VEASLAALKS AGVEGIMVDV WWGIAEAEGP GQYNFNGYME LMEMARKNGL KVQAVMSFHQ 240 CGGNVGDSVT IPLPKWVLEE MDKDQDLAYT DRSGRRNYEY VSLGCDALPV LKGRTPIQCY 300 ADFMRAFRDH FATYMGNTIV EIQVGMGPAG ELRYPSYPES NGTWCFPGIG EFQCYDRYML 360 SSLKAAAEAV GKPEWGNAGP SDSGSYKNWP EDTPFFRREG GWNTEYGQFF MSWYSQMLLE 420 HGERILSAAT GVFTASPGVK ISVKVAG 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02905 | PLN02905 | 1.0e-94 | 157 | 447 | 292 | + beta-amylase | ||
pfam01373 | Glyco_hydro_14 | 2.0e-105 | 160 | 447 | 294 | + Glycosyl hydrolase family 14. This family are beta amylases. | ||
PLN02801 | PLN02801 | 4.0e-120 | 157 | 447 | 292 | + beta-amylase | ||
PLN02803 | PLN02803 | 2.0e-174 | 139 | 447 | 309 | + beta-amylase | ||
PLN00197 | PLN00197 | 0 | 106 | 447 | 350 | + beta-amylase; Provisional |
Gene Ontology | |
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GO Term | Description |
GO:0000272 | polysaccharide catabolic process |
GO:0016161 | beta-amylase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACG29617.1 | 0 | 64 | 447 | 1 | 398 | beta-amylase [Zea mays] |
GenBank | EAY88485.1 | 0 | 64 | 447 | 1 | 382 | hypothetical protein OsI_09956 [Oryza sativa Indica Group] |
RefSeq | NP_001048926.1 | 0 | 64 | 447 | 2 | 383 | Os03g0141200 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001148159.1 | 0 | 64 | 447 | 2 | 399 | beta-amylase [Zea mays] |
RefSeq | XP_002468533.1 | 0 | 64 | 447 | 2 | 390 | hypothetical protein SORBIDRAFT_01g047500 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1v3i_A | 0 | 157 | 447 | 12 | 298 | A Chain A, The Roles Of Glu186 And Glu380 In The Catalytic Reaction Of Soybean Beta-Amylase |
PDB | 1wdq_A | 0 | 157 | 447 | 12 | 298 | A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of Soybean Beta-Amylase |
PDB | 1q6g_A | 0 | 157 | 447 | 12 | 298 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (N340t) With Increased Ph Optimum |
PDB | 1wds_A | 0 | 157 | 447 | 12 | 298 | A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of Soybean Beta- Amylase |
PDB | 1uko_D | 0 | 157 | 447 | 12 | 298 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant Substituted At Surface Region |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
starch degradation I | RXN-1827 | EC-3.2.1.2 | β-amylase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FL714440 | 268 | 151 | 418 | 0 |
FE609070 | 263 | 138 | 400 | 0 |
FL763848 | 248 | 180 | 427 | 0 |
FL764329 | 273 | 175 | 445 | 0 |
FL757503 | 246 | 202 | 447 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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