Genome Details
Selected Rep_genome_ID: Rep_534
Total Genomes Found: 1
Total Genomes Found: 1
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola_A
Species
Phocaeicola_A sp003489705
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| Rep_534 | 3,125,088 | 96.7038% | 0% | NA | NA | WIS |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| Rep_534_CGC36 | CGCFAM_00001 | Yes | 6 | 1 | pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan |
| Rep_534_CGC34 | CGCFAM_00005 | Yes | 11 | 7 | |
| Rep_534_CGC33 | CGCFAM_00048 | Yes | 13 | 6 | |
| Rep_534_CGC39 | CGCFAM_00111 | Yes | 5 | 1 | alpha-glucan |
| Rep_534_CGC40 | CGCFAM_00185 | Yes | 3 | 1 | |
| Rep_534_CGC5 | CGCFAM_00306 | Yes | 17 | 8 | |
| Rep_534_CGC35 | CGCFAM_00349 | Yes | 4 | 1 | |
| Rep_534_CGC30 | CGCFAM_00523 | Yes | 4 | 1 | |
| Rep_534_CGC23 | CGCFAM_00640 | Yes | 3 | 1 | |
| Rep_534_CGC29 | CGCFAM_00770 | Yes | 4 | 2 | |
| Rep_534_CGC14 | CGCFAM_01174 | Yes | 4 | 1 | |
| Rep_534_CGC31 | CGCFAM_01307 | Yes | 5 | 2 | |
| Rep_534_CGC2 | CGCFAM_03276 | Yes | 3 | 1 | |
| Rep_534_CGC16 | CGCFAM_03702 | Yes | 4 | 1 | |
| Rep_534_CGC13 | CGCFAM_04850 | Yes | 4 | 2 | |
| Rep_534_CGC25 | CGCFAM_04939 | Yes | 4 | 1 | |
| Rep_534_CGC18 | CGCFAM_06562 | Yes | 8 | 4 |
Top CAZyme Families