Cluster: Rep_534_CGC13
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_534
- CGC Family ID: CGCFAM_04850
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_534_c_6 | Rep_534_c_6_23 | 25500 | 27161 | - | 2.A.81.1.2 |
| CAZyme | Rep_534_c_6 | Rep_534_c_6_24 | 27877 | 30441 | - | GT35 |
| CAZyme | Rep_534_c_6 | Rep_534_c_6_25 | 30478 | 32142 | - | GT3 |
| TC | Rep_534_c_6 | Rep_534_c_6_26 | 32301 | 33197 | - | 2.A.7.3.65 |
Gene ID: Rep_534_c_6_23
Type: TC
Location: 25500 - 27161 (-)
Type: TC
Location: 25500 - 27161 (-)
Gene ID: Rep_534_c_6_24
Type: CAZyme
Location: 27877 - 30441 (-)
Type: CAZyme
Location: 27877 - 30441 (-)
Gene ID: Rep_534_c_6_25
Type: CAZyme
Location: 30478 - 32142 (-)
Type: CAZyme
Location: 30478 - 32142 (-)
Gene ID: Rep_534_c_6_26
Type: TC
Location: 32301 - 33197 (-)
Type: TC
Location: 32301 - 33197 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola_A
Species
Phocaeicola_A sp003489705
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.