Cluster: Rep_534_CGC33
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 6
- Substrate:
- Genome ID: Rep_534
- CGC Family ID: CGCFAM_00048
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_534_c_20 | Rep_534_c_20_38 | 35592 | 37616 | + | GH33 |
| pfam | Rep_534_c_20 | Rep_534_c_20_39 | 37706 | 39148 | - | AhpC-TSA | Redoxin | Thioredoxin_8 |
| CAZyme | Rep_534_c_20 | Rep_534_c_20_40 | 39448 | 41175 | + | CE12 | CE8 |
| CAZyme | Rep_534_c_20 | Rep_534_c_20_41 | 41526 | 43970 | + | GH127 |
| CAZyme | Rep_534_c_20 | Rep_534_c_20_42 | 44009 | 46414 | + | GH127 |
| peptidase | Rep_534_c_20 | Rep_534_c_20_43 | 46429 | 48699 | + | S09.UPB |
| STP | Rep_534_c_20 | Rep_534_c_20_44 | 48794 | 51049 | - | HD |
| CAZyme | Rep_534_c_20 | Rep_534_c_20_45 | 51068 | 52318 | - | GH23 |
| pfam | Rep_534_c_20 | Rep_534_c_20_46 | 52326 | 53129 | - | DUF5683 |
| pfam | Rep_534_c_20 | Rep_534_c_20_47 | 53136 | 54032 | - | ParBc | HTH_ParB | ParB_dimer |
| TC | Rep_534_c_20 | Rep_534_c_20_48 | 54040 | 54807 | - | 8.A.3.2.3 |
| pfam | Rep_534_c_20 | Rep_534_c_20_49 | 55601 | 56371 | + | SurE |
| CAZyme | Rep_534_c_20 | Rep_534_c_20_50 | 56376 | 57518 | + | GT19 |
Gene ID: Rep_534_c_20_38
Type: CAZyme
Location: 35592 - 37616 (+)
Type: CAZyme
Location: 35592 - 37616 (+)
Gene ID: Rep_534_c_20_39
Type: pfam
Location: 37706 - 39148 (-)
Type: pfam
Location: 37706 - 39148 (-)
Gene ID: Rep_534_c_20_40
Type: CAZyme
Location: 39448 - 41175 (+)
Type: CAZyme
Location: 39448 - 41175 (+)
Gene ID: Rep_534_c_20_41
Type: CAZyme
Location: 41526 - 43970 (+)
Type: CAZyme
Location: 41526 - 43970 (+)
Gene ID: Rep_534_c_20_42
Type: CAZyme
Location: 44009 - 46414 (+)
Type: CAZyme
Location: 44009 - 46414 (+)
Gene ID: Rep_534_c_20_43
Type: peptidase
Location: 46429 - 48699 (+)
Type: peptidase
Location: 46429 - 48699 (+)
Gene ID: Rep_534_c_20_44
Type: STP
Location: 48794 - 51049 (-)
Type: STP
Location: 48794 - 51049 (-)
Gene ID: Rep_534_c_20_45
Type: CAZyme
Location: 51068 - 52318 (-)
Type: CAZyme
Location: 51068 - 52318 (-)
Gene ID: Rep_534_c_20_46
Type: pfam
Location: 52326 - 53129 (-)
Type: pfam
Location: 52326 - 53129 (-)
Gene ID: Rep_534_c_20_47
Type: pfam
Location: 53136 - 54032 (-)
Type: pfam
Location: 53136 - 54032 (-)
Gene ID: Rep_534_c_20_48
Type: TC
Location: 54040 - 54807 (-)
Type: TC
Location: 54040 - 54807 (-)
Gene ID: Rep_534_c_20_49
Type: pfam
Location: 55601 - 56371 (+)
Type: pfam
Location: 55601 - 56371 (+)
Gene ID: Rep_534_c_20_50
Type: CAZyme
Location: 56376 - 57518 (+)
Type: CAZyme
Location: 56376 - 57518 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola_A
Species
Phocaeicola_A sp003489705
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.