Cluster: Rep_534_CGC35
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_534
- CGC Family ID: CGCFAM_00349
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_534_c_22 | Rep_534_c_22_19 | 21916 | 22152 | + | 3.D.1.6.4 |
| pfam | Rep_534_c_22 | Rep_534_c_22_20 | 22177 | 23439 | + | ketoacyl-synt | Ketoacyl-synt_C |
| pfam | Rep_534_c_22 | Rep_534_c_22_21 | 23445 | 24419 | + | dsrm | Ribonuclease_3 | Ribonucleas_3_3 |
| CAZyme | Rep_534_c_22 | Rep_534_c_22_22 | 24434 | 25324 | + | GT2 |
Gene ID: Rep_534_c_22_19
Type: TC
Location: 21916 - 22152 (+)
Type: TC
Location: 21916 - 22152 (+)
Gene ID: Rep_534_c_22_20
Type: pfam
Location: 22177 - 23439 (+)
Type: pfam
Location: 22177 - 23439 (+)
Gene ID: Rep_534_c_22_21
Type: pfam
Location: 23445 - 24419 (+)
Type: pfam
Location: 23445 - 24419 (+)
Gene ID: Rep_534_c_22_22
Type: CAZyme
Location: 24434 - 25324 (+)
Type: CAZyme
Location: 24434 - 25324 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola_A
Species
Phocaeicola_A sp003489705
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.