Cluster: Rep_534_CGC14
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_534
- CGC Family ID: CGCFAM_01174
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_534_c_6 | Rep_534_c_6_67 | 79693 | 82419 | - | 4.A.2.1.17 |
| pfam | Rep_534_c_6 | Rep_534_c_6_68 | 82614 | 84044 | + | TRAM | tRNA_U5-meth_tr | Methyltransf_15 | Methyltransf_31 |
| pfam | Rep_534_c_6 | Rep_534_c_6_69 | 84060 | 84977 | + | PseudoU_synth_2 |
| CAZyme | Rep_534_c_6 | Rep_534_c_6_70 | 85037 | 86368 | - | GH28 |
Gene ID: Rep_534_c_6_67
Type: TC
Location: 79693 - 82419 (-)
Type: TC
Location: 79693 - 82419 (-)
Gene ID: Rep_534_c_6_68
Type: pfam
Location: 82614 - 84044 (+)
Type: pfam
Location: 82614 - 84044 (+)
Gene ID: Rep_534_c_6_69
Type: pfam
Location: 84060 - 84977 (+)
Type: pfam
Location: 84060 - 84977 (+)
Gene ID: Rep_534_c_6_70
Type: CAZyme
Location: 85037 - 86368 (-)
Type: CAZyme
Location: 85037 - 86368 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola_A
Species
Phocaeicola_A sp003489705
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.