Cluster: Rep_534_CGC36
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate: pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
- Genome ID: Rep_534
- CGC Family ID: CGCFAM_00001
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_534_c_25 | Rep_534_c_25_20 | 21172 | 24408 | + | 1.B.14.6.1 |
| pfam | Rep_534_c_25 | Rep_534_c_25_21 | 24424 | 26370 | + | SusD_RagB | SusD-like_2 | SusD-like_3 |
| CAZyme | Rep_534_c_25 | Rep_534_c_25_22 | 26897 | 29488 | + | GH2 |
| TF | Rep_534_c_25 | Rep_534_c_25_23 | 29585 | 30481 | - | HTH_1 |
| pfam | Rep_534_c_25 | Rep_534_c_25_24 | 30498 | 31085 | - | DUF6621 |
| TC | Rep_534_c_25 | Rep_534_c_25_25 | 31302 | 33890 | + | 3.A.9.1.2 |
Gene ID: Rep_534_c_25_20
Type: TC
Location: 21172 - 24408 (+)
Type: TC
Location: 21172 - 24408 (+)
Gene ID: Rep_534_c_25_21
Type: pfam
Location: 24424 - 26370 (+)
Type: pfam
Location: 24424 - 26370 (+)
Gene ID: Rep_534_c_25_22
Type: CAZyme
Location: 26897 - 29488 (+)
Type: CAZyme
Location: 26897 - 29488 (+)
Gene ID: Rep_534_c_25_23
Type: TF
Location: 29585 - 30481 (-)
Type: TF
Location: 29585 - 30481 (-)
Gene ID: Rep_534_c_25_24
Type: pfam
Location: 30498 - 31085 (-)
Type: pfam
Location: 30498 - 31085 (-)
Gene ID: Rep_534_c_25_25
Type: TC
Location: 31302 - 33890 (+)
Type: TC
Location: 31302 - 33890 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola_A
Species
Phocaeicola_A sp003489705
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.