Cluster: Rep_534_CGC31
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_534
- CGC Family ID: CGCFAM_01307
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_534_c_19 | Rep_534_c_19_52 | 62590 | 64365 | - | 3.B.1.1.6 |
| pfam | Rep_534_c_19 | Rep_534_c_19_53 | 64573 | 65097 | - | HU-HIG |
| CAZyme | Rep_534_c_19 | Rep_534_c_19_54 | 65579 | 67258 | - | CBM91 | GH43_10 |
| pfam | Rep_534_c_19 | Rep_534_c_19_55 | 67273 | 68508 | - | DUF4861 |
| CAZyme | Rep_534_c_19 | Rep_534_c_19_56 | 68527 | 70134 | - | GH28 |
Gene ID: Rep_534_c_19_52
Type: TC
Location: 62590 - 64365 (-)
Type: TC
Location: 62590 - 64365 (-)
Gene ID: Rep_534_c_19_53
Type: pfam
Location: 64573 - 65097 (-)
Type: pfam
Location: 64573 - 65097 (-)
Gene ID: Rep_534_c_19_54
Type: CAZyme
Location: 65579 - 67258 (-)
Type: CAZyme
Location: 65579 - 67258 (-)
Gene ID: Rep_534_c_19_55
Type: pfam
Location: 67273 - 68508 (-)
Type: pfam
Location: 67273 - 68508 (-)
Gene ID: Rep_534_c_19_56
Type: CAZyme
Location: 68527 - 70134 (-)
Type: CAZyme
Location: 68527 - 70134 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola_A
Species
Phocaeicola_A sp003489705
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.