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Cluster: Rep_534_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_534_c_11 Rep_534_c_11_14 12042 13523 + 2.A.50.2.1
TC Rep_534_c_11 Rep_534_c_11_15 13654 15468 + 3.A.1.106.1
pfam Rep_534_c_11 Rep_534_c_11_16 15557 16468 - PDDEXK_2
CAZyme Rep_534_c_11 Rep_534_c_11_17 16565 17392 + GT2
CAZyme Rep_534_c_11 Rep_534_c_11_18 17546 18664 - GT4
pfam Rep_534_c_11 Rep_534_c_11_19 18735 19853 - Glycos_transf_1 | Glyco_trans_1_4
CAZyme Rep_534_c_11 Rep_534_c_11_20 19962 20945 - GT2
CAZyme Rep_534_c_11 Rep_534_c_11_21 21110 21910 - GT2
Gene ID: Rep_534_c_11_14
Type: TC
Location: 12042 - 13523 (+)
Gene ID: Rep_534_c_11_15
Type: TC
Location: 13654 - 15468 (+)
Gene ID: Rep_534_c_11_16
Type: pfam
Location: 15557 - 16468 (-)
Gene ID: Rep_534_c_11_17
Type: CAZyme
Location: 16565 - 17392 (+)
Gene ID: Rep_534_c_11_18
Type: CAZyme
Location: 17546 - 18664 (-)
Gene ID: Rep_534_c_11_19
Type: pfam
Location: 18735 - 19853 (-)
Gene ID: Rep_534_c_11_20
Type: CAZyme
Location: 19962 - 20945 (-)
Gene ID: Rep_534_c_11_21
Type: CAZyme
Location: 21110 - 21910 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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