Cluster: Rep_534_CGC34
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 7
- Substrate:
- Genome ID: Rep_534
- CGC Family ID: CGCFAM_00005
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_534_c_21 | Rep_534_c_21_42 | 42823 | 43497 | - | 9.B.18.1.3 |
| CAZyme | Rep_534_c_21 | Rep_534_c_21_43 | 43487 | 44602 | - | GT4 |
| CAZyme | Rep_534_c_21 | Rep_534_c_21_44 | 44814 | 45920 | - | GT4 |
| CAZyme | Rep_534_c_21 | Rep_534_c_21_45 | 45917 | 47047 | - | GT4 |
| NULL(UNKNOWN) | Rep_534_c_21 | Rep_534_c_21_46 | 47044 | 48336 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_534_c_21 | Rep_534_c_21_47 | 48338 | 49369 | - | GT2 |
| CAZyme | Rep_534_c_21 | Rep_534_c_21_48 | 49395 | 50255 | - | GT2 |
| CAZyme | Rep_534_c_21 | Rep_534_c_21_49 | 50295 | 51251 | - | GT8 |
| NULL(UNKNOWN) | Rep_534_c_21 | Rep_534_c_21_50 | 51248 | 52216 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_534_c_21 | Rep_534_c_21_51 | 52224 | 53195 | - | Acyl_transf_3 |
| CAZyme | Rep_534_c_21 | Rep_534_c_21_52 | 54176 | 55177 | - | GT2 |
Gene ID: Rep_534_c_21_42
Type: TC
Location: 42823 - 43497 (-)
Type: TC
Location: 42823 - 43497 (-)
Gene ID: Rep_534_c_21_43
Type: CAZyme
Location: 43487 - 44602 (-)
Type: CAZyme
Location: 43487 - 44602 (-)
Gene ID: Rep_534_c_21_44
Type: CAZyme
Location: 44814 - 45920 (-)
Type: CAZyme
Location: 44814 - 45920 (-)
Gene ID: Rep_534_c_21_45
Type: CAZyme
Location: 45917 - 47047 (-)
Type: CAZyme
Location: 45917 - 47047 (-)
Gene ID: Rep_534_c_21_46
Type:
Location: 47044 - 48336 (-)
Type:
Location: 47044 - 48336 (-)
Gene ID: Rep_534_c_21_47
Type: CAZyme
Location: 48338 - 49369 (-)
Type: CAZyme
Location: 48338 - 49369 (-)
Gene ID: Rep_534_c_21_48
Type: CAZyme
Location: 49395 - 50255 (-)
Type: CAZyme
Location: 49395 - 50255 (-)
Gene ID: Rep_534_c_21_49
Type: CAZyme
Location: 50295 - 51251 (-)
Type: CAZyme
Location: 50295 - 51251 (-)
Gene ID: Rep_534_c_21_50
Type:
Location: 51248 - 52216 (-)
Type:
Location: 51248 - 52216 (-)
Gene ID: Rep_534_c_21_51
Type: pfam
Location: 52224 - 53195 (-)
Type: pfam
Location: 52224 - 53195 (-)
Gene ID: Rep_534_c_21_52
Type: CAZyme
Location: 54176 - 55177 (-)
Type: CAZyme
Location: 54176 - 55177 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola_A
Species
Phocaeicola_A sp003489705
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.