Cluster: Rep_534_CGC39
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate: alpha-glucan
- Genome ID: Rep_534
- CGC Family ID: CGCFAM_00111
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_534_c_40 | Rep_534_c_40_2 | 206 | 1021 | + | CE1 |
| TC | Rep_534_c_40 | Rep_534_c_40_3 | 1157 | 3826 | - | 3.A.3.2.17 |
| TF | Rep_534_c_40 | Rep_534_c_40_4 | 4403 | 4909 | - | GerE |
| STP | Rep_534_c_40 | Rep_534_c_40_5 | 5019 | 6194 | + | FecR |
| TC | Rep_534_c_40 | Rep_534_c_40_6 | 6292 | 9864 | + | 1.B.14.6.1 |
Gene ID: Rep_534_c_40_2
Type: CAZyme
Location: 206 - 1021 (+)
Type: CAZyme
Location: 206 - 1021 (+)
Gene ID: Rep_534_c_40_3
Type: TC
Location: 1157 - 3826 (-)
Type: TC
Location: 1157 - 3826 (-)
Gene ID: Rep_534_c_40_4
Type: TF
Location: 4403 - 4909 (-)
Type: TF
Location: 4403 - 4909 (-)
Gene ID: Rep_534_c_40_5
Type: STP
Location: 5019 - 6194 (+)
Type: STP
Location: 5019 - 6194 (+)
Gene ID: Rep_534_c_40_6
Type: TC
Location: 6292 - 9864 (+)
Type: TC
Location: 6292 - 9864 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola_A
Species
Phocaeicola_A sp003489705
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.