Cluster: Rep_534_CGC5
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 8
- Substrate:
- Genome ID: Rep_534
- CGC Family ID: CGCFAM_00306
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_534_c_2 | Rep_534_c_2_87 | 116475 | 118562 | + | GH127 |
| TC | Rep_534_c_2 | Rep_534_c_2_88 | 118790 | 120160 | + | 2.A.1.1.74 |
| CAZyme | Rep_534_c_2 | Rep_534_c_2_89 | 120144 | 122297 | + | GH78 |
| CAZyme | Rep_534_c_2 | Rep_534_c_2_90 | 122309 | 125008 | + | GH138 |
| pfam | Rep_534_c_2 | Rep_534_c_2_91 | 125221 | 125682 | + | Bac_DNA_binding | HU-HIG |
| CAZyme | Rep_534_c_2 | Rep_534_c_2_92 | 125758 | 129942 | + | CBM57 | CBM97 | GH137 | GH2 |
| CAZyme | Rep_534_c_2 | Rep_534_c_2_93 | 129956 | 133288 | + | GH2 |
| CAZyme | Rep_534_c_2 | Rep_534_c_2_94 | 133536 | 136796 | + | GH106 |
| CAZyme | Rep_534_c_2 | Rep_534_c_2_95 | 136820 | 138283 | + | CE20 |
| CAZyme | Rep_534_c_2 | Rep_534_c_2_96 | 138304 | 140571 | + | GH139 |
| NULL(UNKNOWN) | Rep_534_c_2 | Rep_534_c_2_97 | 140568 | 140675 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_534_c_2 | Rep_534_c_2_98 | 141261 | 141980 | + | 3.A.1.122.2 |
| TC | Rep_534_c_2 | Rep_534_c_2_99 | 141977 | 143251 | + | 3.A.1.122.2 |
| TC | Rep_534_c_2 | Rep_534_c_2_100 | 143280 | 144530 | + | 3.A.1.122.1 |
| pfam | Rep_534_c_2 | Rep_534_c_2_101 | 144573 | 145676 | + | HlyD_3 | HlyD_D23 |
| pfam | Rep_534_c_2 | Rep_534_c_2_102 | 145691 | 147016 | + | OEP | OEP |
| TC | Rep_534_c_2 | Rep_534_c_2_103 | 147652 | 148998 | + | 3.A.5.1.1 |
Gene ID: Rep_534_c_2_87
Type: CAZyme
Location: 116475 - 118562 (+)
Type: CAZyme
Location: 116475 - 118562 (+)
Gene ID: Rep_534_c_2_88
Type: TC
Location: 118790 - 120160 (+)
Type: TC
Location: 118790 - 120160 (+)
Gene ID: Rep_534_c_2_89
Type: CAZyme
Location: 120144 - 122297 (+)
Type: CAZyme
Location: 120144 - 122297 (+)
Gene ID: Rep_534_c_2_90
Type: CAZyme
Location: 122309 - 125008 (+)
Type: CAZyme
Location: 122309 - 125008 (+)
Gene ID: Rep_534_c_2_91
Type: pfam
Location: 125221 - 125682 (+)
Type: pfam
Location: 125221 - 125682 (+)
Gene ID: Rep_534_c_2_92
Type: CAZyme
Location: 125758 - 129942 (+)
Type: CAZyme
Location: 125758 - 129942 (+)
Gene ID: Rep_534_c_2_93
Type: CAZyme
Location: 129956 - 133288 (+)
Type: CAZyme
Location: 129956 - 133288 (+)
Gene ID: Rep_534_c_2_94
Type: CAZyme
Location: 133536 - 136796 (+)
Type: CAZyme
Location: 133536 - 136796 (+)
Gene ID: Rep_534_c_2_95
Type: CAZyme
Location: 136820 - 138283 (+)
Type: CAZyme
Location: 136820 - 138283 (+)
Gene ID: Rep_534_c_2_96
Type: CAZyme
Location: 138304 - 140571 (+)
Type: CAZyme
Location: 138304 - 140571 (+)
Gene ID: Rep_534_c_2_97
Type:
Location: 140568 - 140675 (-)
Type:
Location: 140568 - 140675 (-)
Gene ID: Rep_534_c_2_98
Type: TC
Location: 141261 - 141980 (+)
Type: TC
Location: 141261 - 141980 (+)
Gene ID: Rep_534_c_2_99
Type: TC
Location: 141977 - 143251 (+)
Type: TC
Location: 141977 - 143251 (+)
Gene ID: Rep_534_c_2_100
Type: TC
Location: 143280 - 144530 (+)
Type: TC
Location: 143280 - 144530 (+)
Gene ID: Rep_534_c_2_101
Type: pfam
Location: 144573 - 145676 (+)
Type: pfam
Location: 144573 - 145676 (+)
Gene ID: Rep_534_c_2_102
Type: pfam
Location: 145691 - 147016 (+)
Type: pfam
Location: 145691 - 147016 (+)
Gene ID: Rep_534_c_2_103
Type: TC
Location: 147652 - 148998 (+)
Type: TC
Location: 147652 - 148998 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola_A
Species
Phocaeicola_A sp003489705
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.