Cluster: Rep_534_CGC2
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_534
- CGC Family ID: CGCFAM_03276
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_534_c_1 | Rep_534_c_1_6 | 10762 | 13905 | + | 1.B.14.6.2 |
| pfam | Rep_534_c_1 | Rep_534_c_1_7 | 13913 | 15592 | + | SusD_RagB |
| CAZyme | Rep_534_c_1 | Rep_534_c_1_8 | 16210 | 18114 | + | PL11_1 |
Gene ID: Rep_534_c_1_6
Type: TC
Location: 10762 - 13905 (+)
Type: TC
Location: 10762 - 13905 (+)
Gene ID: Rep_534_c_1_7
Type: pfam
Location: 13913 - 15592 (+)
Type: pfam
Location: 13913 - 15592 (+)
Gene ID: Rep_534_c_1_8
Type: CAZyme
Location: 16210 - 18114 (+)
Type: CAZyme
Location: 16210 - 18114 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola_A
Species
Phocaeicola_A sp003489705
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.