Cluster: Rep_534_CGC16
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_534
- CGC Family ID: CGCFAM_03702
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_534_c_8 | Rep_534_c_8_24 | 30021 | 33035 | - | 1.B.14.6.1 |
| pfam | Rep_534_c_8 | Rep_534_c_8_25 | 33581 | 34231 | + | HU-HIG |
| pfam | Rep_534_c_8 | Rep_534_c_8_26 | 34321 | 35475 | + | Fe-ADH | Fe-ADH_2 | ADH_Fe_C |
| CAZyme | Rep_534_c_8 | Rep_534_c_8_27 | 35627 | 36385 | + | GT2 |
Gene ID: Rep_534_c_8_24
Type: TC
Location: 30021 - 33035 (-)
Type: TC
Location: 30021 - 33035 (-)
Gene ID: Rep_534_c_8_25
Type: pfam
Location: 33581 - 34231 (+)
Type: pfam
Location: 33581 - 34231 (+)
Gene ID: Rep_534_c_8_26
Type: pfam
Location: 34321 - 35475 (+)
Type: pfam
Location: 34321 - 35475 (+)
Gene ID: Rep_534_c_8_27
Type: CAZyme
Location: 35627 - 36385 (+)
Type: CAZyme
Location: 35627 - 36385 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola_A
Species
Phocaeicola_A sp003489705
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.