Genome Details
Selected Rep_genome_ID: HRGMv2_4539
Total Genomes Found: 1
Total Genomes Found: 1
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus_C
Species
Ruminococcus_C sp019417665
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| HRGMv2_4539 | 3,008,884 | 98.65% | 0% | Japan | Asia | HRGM |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| HRGMv2_4539_CGC33 | CGCFAM_00015 | Yes | 9 | 4 | |
| HRGMv2_4539_CGC19 | CGCFAM_00097 | Yes | 5 | 1 | |
| HRGMv2_4539_CGC2 | CGCFAM_00268 | Yes | 7 | 3 | |
| HRGMv2_4539_CGC21 | CGCFAM_00281 | Yes | 12 | 4 | |
| HRGMv2_4539_CGC25 | CGCFAM_00621 | Yes | 3 | 1 | |
| HRGMv2_4539_CGC23 | CGCFAM_00943 | Yes | 5 | 1 | |
| HRGMv2_4539_CGC34 | CGCFAM_00952 | Yes | 4 | 1 | |
| HRGMv2_4539_CGC1 | CGCFAM_01058 | Yes | 3 | 2 | |
| HRGMv2_4539_CGC16 | CGCFAM_01097 | Yes | 3 | 2 | |
| HRGMv2_4539_CGC28 | CGCFAM_01382 | Yes | 5 | 1 | |
| HRGMv2_4539_CGC32 | CGCFAM_01800 | Yes | 3 | 1 | |
| HRGMv2_4539_CGC20 | CGCFAM_03008 | Yes | 5 | 2 | |
| HRGMv2_4539_CGC15 | CGCFAM_03009 | Yes | 6 | 3 | |
| HRGMv2_4539_CGC4 | CGCFAM_04715 | Yes | 6 | 2 | |
| HRGMv2_4539_CGC30 | CGCFAM_06570 | Yes | 4 | 1 | |
| HRGMv2_4539_CGC11 | CGCFAM_10295 | Yes | 5 | 2 | |
| HRGMv2_4539_CGC10 | CGCFAM_10641 | Yes | 6 | 1 |
Top CAZyme Families