Cluster: HRGMv2_4539_CGC34
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4539
- CGC Family ID: CGCFAM_00952
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4539_51 | HRGMv2_4539_51_1 | 159 | 3128 | - | GH48 |
| NULL(UNKNOWN) | HRGMv2_4539_51 | HRGMv2_4539_51_2 | 3178 | 3603 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_4539_51 | HRGMv2_4539_51_3 | 3715 | 4764 | + | 3.A.1.132.4 |
| TC | HRGMv2_4539_51 | HRGMv2_4539_51_4 | 4771 | 5502 | + | 3.A.1.132.1 |
Gene ID: HRGMv2_4539_51_1
Type: CAZyme
Location: 159 - 3128 (-)
Type: CAZyme
Location: 159 - 3128 (-)
Gene ID: HRGMv2_4539_51_2
Type:
Location: 3178 - 3603 (+)
Type:
Location: 3178 - 3603 (+)
Gene ID: HRGMv2_4539_51_3
Type: TC
Location: 3715 - 4764 (+)
Type: TC
Location: 3715 - 4764 (+)
Gene ID: HRGMv2_4539_51_4
Type: TC
Location: 4771 - 5502 (+)
Type: TC
Location: 4771 - 5502 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus_C
Species
Ruminococcus_C sp019417665
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_4539_51_1 | vegan > omnivore | 1.08444 | 0.01232 |
| HRGMv2_4539_51_4 | vegan > omnivore | 1.06968 | 0.01232 |