Cluster: HRGMv2_4539_CGC20
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4539
- CGC Family ID: CGCFAM_03008
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4539_22 | HRGMv2_4539_22_3 | 3551 | 6721 | - | CBM4 | GH9 |
| CAZyme | HRGMv2_4539_22 | HRGMv2_4539_22_4 | 7090 | 10176 | - | CBM79 | GH9 |
| pfam | HRGMv2_4539_22 | HRGMv2_4539_22_5 | 10394 | 11170 | - | YgjP-like |
| TC | HRGMv2_4539_22 | HRGMv2_4539_22_6 | 11354 | 11722 | - | 1.A.43.1.11 |
| TC | HRGMv2_4539_22 | HRGMv2_4539_22_7 | 11866 | 12546 | - | 1.A.16.5.1 |
Gene ID: HRGMv2_4539_22_3
Type: CAZyme
Location: 3551 - 6721 (-)
Type: CAZyme
Location: 3551 - 6721 (-)
Gene ID: HRGMv2_4539_22_4
Type: CAZyme
Location: 7090 - 10176 (-)
Type: CAZyme
Location: 7090 - 10176 (-)
Gene ID: HRGMv2_4539_22_5
Type: pfam
Location: 10394 - 11170 (-)
Type: pfam
Location: 10394 - 11170 (-)
Gene ID: HRGMv2_4539_22_6
Type: TC
Location: 11354 - 11722 (-)
Type: TC
Location: 11354 - 11722 (-)
Gene ID: HRGMv2_4539_22_7
Type: TC
Location: 11866 - 12546 (-)
Type: TC
Location: 11866 - 12546 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus_C
Species
Ruminococcus_C sp019417665
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.