Cluster: HRGMv2_4539_CGC2
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_4539
- CGC Family ID: CGCFAM_00268
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4539_1 | HRGMv2_4539_1_95 | 99637 | 102093 | + | GH94 |
| pfam | HRGMv2_4539_1 | HRGMv2_4539_1_96 | 102889 | 104028 | + | SUFU |
| CAZyme | HRGMv2_4539_1 | HRGMv2_4539_1_97 | 104072 | 105220 | + | GH5_4 |
| pfam | HRGMv2_4539_1 | HRGMv2_4539_1_98 | 105427 | 106104 | + | AIM24 |
| TC | HRGMv2_4539_1 | HRGMv2_4539_1_99 | 106459 | 107034 | - | 4.F.1.1.8 |
| pfam | HRGMv2_4539_1 | HRGMv2_4539_1_100 | 107018 | 108361 | - | UPF0004 | Radical_SAM | TRAM_2 |
| CAZyme | HRGMv2_4539_1 | HRGMv2_4539_1_101 | 108529 | 109470 | - | CE4 |
Gene ID: HRGMv2_4539_1_95
Type: CAZyme
Location: 99637 - 102093 (+)
Type: CAZyme
Location: 99637 - 102093 (+)
Gene ID: HRGMv2_4539_1_96
Type: pfam
Location: 102889 - 104028 (+)
Type: pfam
Location: 102889 - 104028 (+)
Gene ID: HRGMv2_4539_1_97
Type: CAZyme
Location: 104072 - 105220 (+)
Type: CAZyme
Location: 104072 - 105220 (+)
Gene ID: HRGMv2_4539_1_98
Type: pfam
Location: 105427 - 106104 (+)
Type: pfam
Location: 105427 - 106104 (+)
Gene ID: HRGMv2_4539_1_99
Type: TC
Location: 106459 - 107034 (-)
Type: TC
Location: 106459 - 107034 (-)
Gene ID: HRGMv2_4539_1_100
Type: pfam
Location: 107018 - 108361 (-)
Type: pfam
Location: 107018 - 108361 (-)
Gene ID: HRGMv2_4539_1_101
Type: CAZyme
Location: 108529 - 109470 (-)
Type: CAZyme
Location: 108529 - 109470 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus_C
Species
Ruminococcus_C sp019417665
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.