Cluster: HRGMv2_4539_CGC28
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4539
- CGC Family ID: CGCFAM_01382
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4539_39 | HRGMv2_4539_39_4 | 4787 | 5236 | - | 9.A.11.1.1 |
| TC | HRGMv2_4539_39 | HRGMv2_4539_39_5 | 6266 | 7291 | + | 9.A.11.1.1 |
| pfam | HRGMv2_4539_39 | HRGMv2_4539_39_6 | 7518 | 7877 | + | SpoVAC_SpoVAEB |
| TC | HRGMv2_4539_39 | HRGMv2_4539_39_7 | 8486 | 9760 | + | 2.A.1.62.2 |
| CAZyme | HRGMv2_4539_39 | HRGMv2_4539_39_8 | 9918 | 11060 | + | GT4 |
Gene ID: HRGMv2_4539_39_4
Type: TC
Location: 4787 - 5236 (-)
Type: TC
Location: 4787 - 5236 (-)
Gene ID: HRGMv2_4539_39_5
Type: TC
Location: 6266 - 7291 (+)
Type: TC
Location: 6266 - 7291 (+)
Gene ID: HRGMv2_4539_39_6
Type: pfam
Location: 7518 - 7877 (+)
Type: pfam
Location: 7518 - 7877 (+)
Gene ID: HRGMv2_4539_39_7
Type: TC
Location: 8486 - 9760 (+)
Type: TC
Location: 8486 - 9760 (+)
Gene ID: HRGMv2_4539_39_8
Type: CAZyme
Location: 9918 - 11060 (+)
Type: CAZyme
Location: 9918 - 11060 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus_C
Species
Ruminococcus_C sp019417665
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.