Cluster: HRGMv2_4539_CGC23
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4539
- CGC Family ID: CGCFAM_00943
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4539_25 | HRGMv2_4539_25_14 | 11253 | 11729 | - | 3.A.2.2.2 |
| TC | HRGMv2_4539_25 | HRGMv2_4539_25_15 | 11722 | 13695 | - | 3.A.2.2.2 |
| NULL(UNKNOWN) | HRGMv2_4539_25 | HRGMv2_4539_25_16 | 13732 | 14043 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | HRGMv2_4539_25 | HRGMv2_4539_25_17 | 14671 | 15543 | - | HTH_AraC | HTH_AraC |
| CAZyme | HRGMv2_4539_25 | HRGMv2_4539_25_18 | 15672 | 17651 | + | GH31_1 |
Gene ID: HRGMv2_4539_25_14
Type: TC
Location: 11253 - 11729 (-)
Type: TC
Location: 11253 - 11729 (-)
Gene ID: HRGMv2_4539_25_15
Type: TC
Location: 11722 - 13695 (-)
Type: TC
Location: 11722 - 13695 (-)
Gene ID: HRGMv2_4539_25_16
Type:
Location: 13732 - 14043 (-)
Type:
Location: 13732 - 14043 (-)
Gene ID: HRGMv2_4539_25_17
Type: TF
Location: 14671 - 15543 (-)
Type: TF
Location: 14671 - 15543 (-)
Gene ID: HRGMv2_4539_25_18
Type: CAZyme
Location: 15672 - 17651 (+)
Type: CAZyme
Location: 15672 - 17651 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus_C
Species
Ruminococcus_C sp019417665
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.