Cluster: HRGMv2_4539_CGC19
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4539
- CGC Family ID: CGCFAM_00097
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4539_21 | HRGMv2_4539_21_2 | 1562 | 2884 | + | 3.A.1.1.20 |
| TC | HRGMv2_4539_21 | HRGMv2_4539_21_3 | 2889 | 3770 | + | 3.A.1.1.20 |
| TC | HRGMv2_4539_21 | HRGMv2_4539_21_4 | 3767 | 4618 | + | 3.A.1.1.20 |
| TC | HRGMv2_4539_21 | HRGMv2_4539_21_5 | 4622 | 5716 | + | 3.A.1.1.28 |
| CAZyme | HRGMv2_4539_21 | HRGMv2_4539_21_6 | 5728 | 7014 | + | GH32 |
Gene ID: HRGMv2_4539_21_2
Type: TC
Location: 1562 - 2884 (+)
Type: TC
Location: 1562 - 2884 (+)
Gene ID: HRGMv2_4539_21_3
Type: TC
Location: 2889 - 3770 (+)
Type: TC
Location: 2889 - 3770 (+)
Gene ID: HRGMv2_4539_21_4
Type: TC
Location: 3767 - 4618 (+)
Type: TC
Location: 3767 - 4618 (+)
Gene ID: HRGMv2_4539_21_5
Type: TC
Location: 4622 - 5716 (+)
Type: TC
Location: 4622 - 5716 (+)
Gene ID: HRGMv2_4539_21_6
Type: CAZyme
Location: 5728 - 7014 (+)
Type: CAZyme
Location: 5728 - 7014 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus_C
Species
Ruminococcus_C sp019417665
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.