Cluster: HRGMv2_4539_CGC15
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_4539
- CGC Family ID: CGCFAM_03009
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4539_13 | HRGMv2_4539_13_16 | 15954 | 18161 | + | GH74 | GH74 |
| CAZyme | HRGMv2_4539_13 | HRGMv2_4539_13_17 | 18158 | 18934 | + | GH25 |
| pfam | HRGMv2_4539_13 | HRGMv2_4539_13_18 | 19306 | 20286 | + | PMI_typeI_cat | MPI_cupin_dom |
| pfam | HRGMv2_4539_13 | HRGMv2_4539_13_19 | 20305 | 21249 | + | ROK | BcrAD_BadFG |
| CAZyme | HRGMv2_4539_13 | HRGMv2_4539_13_20 | 21492 | 24002 | + | GH5_4 |
| TC | HRGMv2_4539_13 | HRGMv2_4539_13_21 | 24422 | 25156 | + | 3.A.2.1.2 |
Gene ID: HRGMv2_4539_13_16
Type: CAZyme
Location: 15954 - 18161 (+)
Type: CAZyme
Location: 15954 - 18161 (+)
Gene ID: HRGMv2_4539_13_17
Type: CAZyme
Location: 18158 - 18934 (+)
Type: CAZyme
Location: 18158 - 18934 (+)
Gene ID: HRGMv2_4539_13_18
Type: pfam
Location: 19306 - 20286 (+)
Type: pfam
Location: 19306 - 20286 (+)
Gene ID: HRGMv2_4539_13_19
Type: pfam
Location: 20305 - 21249 (+)
Type: pfam
Location: 20305 - 21249 (+)
Gene ID: HRGMv2_4539_13_20
Type: CAZyme
Location: 21492 - 24002 (+)
Type: CAZyme
Location: 21492 - 24002 (+)
Gene ID: HRGMv2_4539_13_21
Type: TC
Location: 24422 - 25156 (+)
Type: TC
Location: 24422 - 25156 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus_C
Species
Ruminococcus_C sp019417665
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.