Cluster: HRGMv2_4539_CGC4
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4539
- CGC Family ID: CGCFAM_04715
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4539_3 | HRGMv2_4539_3_61 | 68868 | 70133 | - | 3.A.1.122.2 |
| NULL(UNKNOWN) | HRGMv2_4539_3 | HRGMv2_4539_3_62 | 70149 | 71909 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_4539_3 | HRGMv2_4539_3_63 | 71906 | 72616 | - | 3.A.1.122.2 |
| pfam | HRGMv2_4539_3 | HRGMv2_4539_3_64 | 72606 | 74033 | - | HlyD_3 | Biotin_lipoyl_2 |
| CAZyme | HRGMv2_4539_3 | HRGMv2_4539_3_65 | 74366 | 77164 | + | GH2 |
| CAZyme | HRGMv2_4539_3 | HRGMv2_4539_3_66 | 77270 | 79180 | + | CBM22 | GH10 |
Gene ID: HRGMv2_4539_3_61
Type: TC
Location: 68868 - 70133 (-)
Type: TC
Location: 68868 - 70133 (-)
Gene ID: HRGMv2_4539_3_62
Type:
Location: 70149 - 71909 (-)
Type:
Location: 70149 - 71909 (-)
Gene ID: HRGMv2_4539_3_63
Type: TC
Location: 71906 - 72616 (-)
Type: TC
Location: 71906 - 72616 (-)
Gene ID: HRGMv2_4539_3_64
Type: pfam
Location: 72606 - 74033 (-)
Type: pfam
Location: 72606 - 74033 (-)
Gene ID: HRGMv2_4539_3_65
Type: CAZyme
Location: 74366 - 77164 (+)
Type: CAZyme
Location: 74366 - 77164 (+)
Gene ID: HRGMv2_4539_3_66
Type: CAZyme
Location: 77270 - 79180 (+)
Type: CAZyme
Location: 77270 - 79180 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus_C
Species
Ruminococcus_C sp019417665
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.