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Cluster: HRGMv2_4539_CGC21

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4539_23 HRGMv2_4539_23_18 16209 16451 + 3.D.1.6.3
TC HRGMv2_4539_23 HRGMv2_4539_23_19 16774 17550 + 3.A.1.103.4
TC HRGMv2_4539_23 HRGMv2_4539_23_20 17551 18804 + 3.A.1.103.4
pfam HRGMv2_4539_23 HRGMv2_4539_23_21 18918 19976 + MetW | Methyltransf_11 | Methyltransf_23 | Methyltransf_25
NULL(UNKNOWN) HRGMv2_4539_23 HRGMv2_4539_23_22 20119 20628 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_4539_23 HRGMv2_4539_23_23 20625 21737 + GT4
NULL(UNKNOWN) HRGMv2_4539_23 HRGMv2_4539_23_24 21807 21995 + NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) HRGMv2_4539_23 HRGMv2_4539_23_25 21982 22527 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_4539_23 HRGMv2_4539_23_26 22554 23741 + GT4
CAZyme HRGMv2_4539_23 HRGMv2_4539_23_27 23746 24930 + GT4
NULL(UNKNOWN) HRGMv2_4539_23 HRGMv2_4539_23_28 25366 27864 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_4539_23 HRGMv2_4539_23_29 27891 28862 + GT2
Gene ID: HRGMv2_4539_23_18
Type: TC
Location: 16209 - 16451 (+)
Gene ID: HRGMv2_4539_23_19
Type: TC
Location: 16774 - 17550 (+)
Gene ID: HRGMv2_4539_23_20
Type: TC
Location: 17551 - 18804 (+)
Gene ID: HRGMv2_4539_23_21
Type: pfam
Location: 18918 - 19976 (+)
Gene ID: HRGMv2_4539_23_22
Type:
Location: 20119 - 20628 (+)
Gene ID: HRGMv2_4539_23_23
Type: CAZyme
Location: 20625 - 21737 (+)
Gene ID: HRGMv2_4539_23_24
Type:
Location: 21807 - 21995 (+)
Gene ID: HRGMv2_4539_23_25
Type:
Location: 21982 - 22527 (+)
Gene ID: HRGMv2_4539_23_26
Type: CAZyme
Location: 22554 - 23741 (+)
Gene ID: HRGMv2_4539_23_27
Type: CAZyme
Location: 23746 - 24930 (+)
Gene ID: HRGMv2_4539_23_28
Type:
Location: 25366 - 27864 (+)
Gene ID: HRGMv2_4539_23_29
Type: CAZyme
Location: 27891 - 28862 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_4539_23_19 vegan > omnivore 1.95434 0.01232
HRGMv2_4539_23_19 vegetarian > omnivore 1.46407 0.00861

🧭 Explore Read Mapping of CGC

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