Cluster: HRGMv2_4539_CGC10
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4539
- CGC Family ID: CGCFAM_10641
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4539_9 | HRGMv2_4539_9_23 | 18286 | 19446 | - | 9.B.10.1.1 |
| pfam | HRGMv2_4539_9 | HRGMv2_4539_9_24 | 19538 | 21133 | - | Transpeptidase |
| CAZyme | HRGMv2_4539_9 | HRGMv2_4539_9_25 | 21632 | 23095 | + | GT5 |
| pfam | HRGMv2_4539_9 | HRGMv2_4539_9_26 | 23553 | 24407 | + | PDH_N | NAD_binding_2 | PDH_C |
| pfam | HRGMv2_4539_9 | HRGMv2_4539_9_27 | 24424 | 25431 | + | MTS | PrmA | Methyltransf_31 |
| TC | HRGMv2_4539_9 | HRGMv2_4539_9_28 | 25815 | 26309 | - | 1.A.22.1.1 |
Gene ID: HRGMv2_4539_9_23
Type: TC
Location: 18286 - 19446 (-)
Type: TC
Location: 18286 - 19446 (-)
Gene ID: HRGMv2_4539_9_24
Type: pfam
Location: 19538 - 21133 (-)
Type: pfam
Location: 19538 - 21133 (-)
Gene ID: HRGMv2_4539_9_25
Type: CAZyme
Location: 21632 - 23095 (+)
Type: CAZyme
Location: 21632 - 23095 (+)
Gene ID: HRGMv2_4539_9_26
Type: pfam
Location: 23553 - 24407 (+)
Type: pfam
Location: 23553 - 24407 (+)
Gene ID: HRGMv2_4539_9_27
Type: pfam
Location: 24424 - 25431 (+)
Type: pfam
Location: 24424 - 25431 (+)
Gene ID: HRGMv2_4539_9_28
Type: TC
Location: 25815 - 26309 (-)
Type: TC
Location: 25815 - 26309 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus_C
Species
Ruminococcus_C sp019417665
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_4539_9_26 | vegan > omnivore | 2.15951 | 0.01232 |
| HRGMv2_4539_9_26 | vegetarian > omnivore | 2.23140 | 0.00861 |